Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2803 ATGGAGGAAGAAGAACCTTCCATAACATCGCCACTTCCAGGAACGTTACACAAGTTCCTCTCCCGCAGTGCCAAGCCTGTCTTCGCCCCGACGCCTCTCGCAGTGGTCCGCTCCACCACCAGCAACGGCGGCGCGCGCGTTCTTGCCGCGCCGCAAAACCCTAGCGAGAACGATCCTCTCCAGGAAGAAGGACAGGGCGAAACCGGCTTCGATGTTTCTTATTTCACCGCGCTGAAGAAAAAGCAAAAACAACAACGAAACAGGCTTTGGCTCGAGAGGTTTCTCAAGGCCACGGACACAATGTTCGAGGCCAAAGGAGAGTCTCTGAAATCGAAGGCGCCAATGGAAGAAAGACTAGAAGAAGAGGAGGAAGGCGAAGAGGTTGAATCAACTCCACCGGTTCAACCGGTGCCGAGAGCGTCGGAACCGGTTCGACCTGTGCAGAAAATAACGGTTACTGAGGACGTGGAGGAGGTGAAGGTGCGGAAGACTGTGGAGAAGAGGAATATTCCTAATCTGGAGGACGGGGAGTTTCCGGAGGAGGCTGGATGGTTCTTGCTTGGGAGGAAGGTTGAGGTTGCGGTTTCGACGGCCAGAGGAGTGAACAGGTTGGTGGACAATGAAATCATTCATTTCAACTTTCCTCTTCCGACTTACTCGAGGAAGTCTCAGTTGATCGTTCGAGTTTCAACCAAGCGTTCTGGAGAGGTTGGGAGGATGCCAATGGAATGGGCAAAGGTTGTGATTCCGCTTATGCTCTCTGGAAATGTCAAGGTTCGAGGCCGATGCATTGCTGCTCCAGATAAACTGGAGATGATGCAAGAGATTATGTTGTTAGTAAGCTTTTATATTCACAACTCTGTATTTGCCGACCATGTTGACACCTCTTGGAGGCTAGAGGCTTGTGGTAAAATTGATGATACTATATACCCACTTCTTGCATTACTAAAAATGCTAGAGATCAAGCCATCTCAAAAGGCTGAATTCACGCCAGAAGATATAGATTCTCGAAAACGGTTGCTCTATCCGAGTGCTGAGTCAGATGAAGCTGCAGGATTGCCTTTGATCAAGCGAAGAAAGGGTGGTGAGCCTATTCCAGAGCAAACTCATGACGAACAAGCACTTTCAGAGTCAGCTTTGAACAAAATTATTGGAGCTGCAGAATTCTATGACTTAAAGGAGAAGGAAGCCCCAAAGGCACTTATGTGTAATTTAAAGCCTTACCAGAAGCAAGCCTTGTATTGGATGGGTGAAATCGAGAAGGGAATGGATGTTGAGAGTGCAGGAAGAAATCTGCATCCCTGCTGGTCAGCCTACACTATATGCAAAGGAAGGACTATTTATGTCAACATATTTACCGGCGAAGCTTCAAAGAAATTTCCCAAATCAACTGAGATGGCAAGAGGAGGAATTCTAGCGGATGCAATGGGACTTGGAAAGACCGTTATGACAATTGCTCTGATACTCAGTAATCCAGGCAAAGGCAACTCAGAAAACAAGGATGCGGTGAATGGATATGATGATCTTATCGCAAATAAAAGAAATATGAGTAAAGTCGAGGGTGGCACTCTTATTGTTTGTCCCATGGCTTTGTTAGGTCAATGGAAGGATGAGCTTGAAACGCATTCAAAGCCCGGTCATGATGTTGTCTTAACAACTTATGGGGTTCTATCAGCTGATTACAAAAATAATGGAGACAATAGCATCTACCACAAGGTCCAGTGGTACAGGGTGGTGCTGGACGAAGCTCATAATATAAAAGCCCATAGAAGTCAGGTTTCCCAGGCTGTTTTTACTCTCTCATCACGCAGCCGCTGGTGTCTAACTGGAACGCCGCTTCAGAATAGCTTGGAAGACCTATACAGTCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTGGCAGAAGTTGATTCAAAGACCTTATGAGAATGGTGATCCAAGATCCCTGAAGTTGGTCAAAGCCATTTTGAGGATGATAATGCTAAGAAGAACGAAGGAATCGAAAGATAAGGAGGGAAGGCCTATACTTTCCCTGCCTCCAATCGATATTGAATTCATTGAATGTAAACAATCAGAATCTGAACGTGACTTCTACGAAGCCCTTTTCGAGCGATCTAAAATTCAATTTGATCAGTACGTTGCACAAGGAAAGGTTCTACACCATTATGCCAATATCCTTGACCTTCTAATGCAGTTGAGGCGCTGTTGCAACCATCCGTTTTTGGTTATGTGCGAAAGCAATTCCCAGAAGTATGCAGACTTAGGCAGACTCGCAAGAAGATTTCTTCAGTCTAATACTGAATCATCCAACGAAAATCAAGATGATCCACAGCACCAATCTGAGTTGAACAAACTCGCAAGTACATTACTTCTAAAATCCGCTTCTTCGCACTCTATGCAACCTCGTGCATACATTGAAGAGGTTTTGGAGAATATTCAAAACGGCGACATTGTAGAATGCTCTGTATGTTTGGAATCTCCAGAAGATCCTGTGTTTACACCATGTGCTCATAAATTTTGCAGAGAATGTCTGTTCAGTTGCTGGGGCACCTCATCGGGTGGCAAATGTCCAATCTGTCGAAAATTGCTCCAGAAAGATGATCTCATCACTTGTCCTGCTGAAAGCCCGTTCAAGGTCGATATTAAGAACAATGTGACAGAGTCTTCGAAGGTTTCAAAGCTATTCGAATTCCTGGAACGTATTCTGAACTCACCCTCGGGTGAAAAGAGCATTGTCTTCAGTCAATGGACTTCGTTTTTTGATCTCTTGGAAAATCCATTGAGGCGGAGAGGCATTGGCTTTTTGAGATATGATGGAAAGTTGACGCAGAAACAGAGGGAGAAAGTTCTGGATGAATTCAATAAAACAAGGGAGAAAAGGGTTTTGCTGATGTCGCTGAAGGCTGGTGGTTTTGGCTTGAACTTAACTGCAGCCTCGAATGTTTTCATTATGGATCCATGGTGGAATCCTGCTGTTGAGGAGCAAGCAATAATGAGAATTCATCGCATAGGACAAAACTGTAGAGTTAAAGTGAGAAGATTTATTGTGAAGGAGACGGTGGAAGATCGGTTGCAACAAGTGCAGGCGAGGAAACAGAGGATGATATCTGGTACCCTCACCGATGATGAGGTTCGGTCTGCTCGGATCCAAGACCTCAAAATGCTATTCACTTCGTGA 3192 0.4539 MEEEEPSITSPLPGTLHKFLSRSAKPVFAPTPLAVVRSTTSNGGARVLAAPQNPSENDPLQEEGQGETGFDVSYFTALKKKQKQQRNRLWLERFLKATDTMFEAKGESLKSKAPMEERLEEEEEGEEVESTPPVQPVPRASEPVRPVQKITVTEDVEEVKVRKTVEKRNIPNLEDGEFPEEAGWFLLGRKVEVAVSTARGVNRLVDNEIIHFNFPLPTYSRKSQLIVRVSTKRSGEVGRMPMEWAKVVIPLMLSGNVKVRGRCIAAPDKLEMMQEIMLLVSFYIHNSVFADHVDTSWRLEACGKIDDTIYPLLALLKMLEIKPSQKAEFTPEDIDSRKRLLYPSAESDEAAGLPLIKRRKGGEPIPEQTHDEQALSESALNKIIGAAEFYDLKEKEAPKALMCNLKPYQKQALYWMGEIEKGMDVESAGRNLHPCWSAYTICKGRTIYVNIFTGEASKKFPKSTEMARGGILADAMGLGKTVMTIALILSNPGKGNSENKDAVNGYDDLIANKRNMSKVEGGTLIVCPMALLGQWKDELETHSKPGHDVVLTTYGVLSADYKNNGDNSIYHKVQWYRVVLDEAHNIKAHRSQVSQAVFTLSSRSRWCLTGTPLQNSLEDLYSLLCFLRVEPWCNWAWWQKLIQRPYENGDPRSLKLVKAILRMIMLRRTKESKDKEGRPILSLPPIDIEFIECKQSESERDFYEALFERSKIQFDQYVAQGKVLHHYANILDLLMQLRRCCNHPFLVMCESNSQKYADLGRLARRFLQSNTESSNENQDDPQHQSELNKLASTLLLKSASSHSMQPRAYIEEVLENIQNGDIVECSVCLESPEDPVFTPCAHKFCRECLFSCWGTSSGGKCPICRKLLQKDDLITCPAESPFKVDIKNNVTESSKVSKLFEFLERILNSPSGEKSIVFSQWTSFFDLLENPLRRRGIGFLRYDGKLTQKQREKVLDEFNKTREKRVLLMSLKAGGFGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQNCRVKVRRFIVKETVEDRLQQVQARKQRMISGTLTDDEVRSARIQDLKMLFTS* 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2803 1063 CDD DEXDc_SHPRH-like 405 668 - -
Pvu7g2803 1063 Pfam Zinc finger, C3HC4 type (RING finger) 825 864 IPR018957 GO:0046872
Pvu7g2803 1063 SMART HIRAN_2 187 284 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pvu7g2803 1063 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 898 1063 IPR001650 -
Pvu7g2803 1063 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 357 1061 - -
Pvu7g2803 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 679 1058 IPR027417 -
Pvu7g2803 1063 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 773 888 IPR013083 -
Pvu7g2803 1063 Gene3D - 460 544 IPR038718 -
Pvu7g2803 1063 Gene3D - 545 680 IPR038718 -
Pvu7g2803 1063 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 461 630 IPR014001 -
Pvu7g2803 1063 MobiDBLite consensus disorder prediction 106 145 - -
Pvu7g2803 1063 SMART ring_2 825 864 IPR001841 -
Pvu7g2803 1063 Pfam HIRAN domain 199 278 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pvu7g2803 1063 PANTHER DNA REPAIR PROTEIN RAD5B 357 1061 - -
Pvu7g2803 1063 Pfam Helicase conserved C-terminal domain 901 1009 IPR001650 -
Pvu7g2803 1063 Pfam SNF2-related domain 408 746 IPR000330 GO:0005524|GO:0140658
Pvu7g2803 1063 SUPERFAMILY RING/U-box 810 871 - -
Pvu7g2803 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 668 IPR027417 -
Pvu7g2803 1063 CDD SF2_C_SNF 887 1020 - -
Pvu7g2803 1063 ProSitePatterns Zinc finger RING-type signature. 840 849 IPR017907 -
Pvu7g2803 1063 Gene3D - 684 1063 IPR027417 -
Pvu7g2803 1063 MobiDBLite consensus disorder prediction 44 66 - -
Pvu7g2803 1063 MobiDBLite consensus disorder prediction 44 62 - -
Pvu7g2803 1063 SMART ultradead3 401 647 IPR014001 -
Pvu7g2803 1063 ProSiteProfiles Zinc finger RING-type profile. 825 865 IPR001841 -
Pvu7g2803 1063 SMART helicmild6 926 1009 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2803 Pvu-Chr7 51067577 51073927 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2803 142 1061 RAD5 or RAD16-like Gene Family AT5G43530 59.440 0.0 1164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu7g2803 SNF2_N 6e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2803 K15505 - gmx:100806677 1668.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2803 7 51067577 51073927 Pvu7g2803 7 51067577 51073927 ECH