LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu7g2783	ATGTCACTTTATATTGGTAATCTGTCTGAACATTCTCGAAGAGATGAACTGGAACGTGTATTCCGTCGATTTGGCCAATGTAATGTTCAGCTCAAAAGAGATGGCTATGGCTTTGTGGTATTTGATTTCCCTCCTGATGCGGAAAAGGCTCTGAGAGCACTGAAAGGTAGAAATATATGTGGGGAGGAGTTGACGCTAACATGGTCCAACAAACAGCCTAATACACATTTTTCTAGATTTTCTAGGGGTGGCAGAAGAAACGGGAATGAGTTTAGAGGGAAAACGGGTTTCAGGGGATGGTCGAATCAGAAGATTGGAAGGGAAAATTCTGTGGATGCGCCTGATGAGGAGAGGGGATATCGTCATGATGGTTTTAAAGACTATGTTGGGGAGGAAAAGGATTATGGGGGAGACTTTCCTGATGAAGGGGGTGGAATTATTTCCAAAACGGAGGAAAATGATAGATGGGGTGAGCCAGTTCACGACCTGGTTGACAATGGGAATGGAAATGCGATTGAGTTTGATCGTTATGAGCCTTATCAGGGCCATGATAGGAAGTATGAGAATGAAGATTATCATGGTGGTTACCCTGGTGGTTCTCCTGCAGCCAATTCCCAAGAGAATGTGAGCAGAGCTCACATTGTTCAGGGTACCTCAAATCGTCCAAGTGGGTCAAAGTTCCATCAAACTTGTTTTAGATGTGGTGATCCAGGTCATAAAATGCGAAATTGTCCGAAAGAACATTCTTCACAGTGGAGATACAGTAGCTTGGGTGTTCGGCAAAATAGTAGAATAGACAAGAGTCATGAAGATGAGAATAAATTTGGATTTGCTTTCCAAATGAGGCACCAGAGAGGTGGAAGGAGGTTATCTGTAACCAGGGAAACGTATCGGCCTCAAAGAAAGGAATACGGGGAAAAGAAGCGAAGCAGAAATGAAATGGAATTGCCTAAAAGGTCTAAAGCAAAGATACACAAGAGATCAGTCTCATCCTCTTTGCCATCTGATTACTCTGCATCTCGGTCTCTTTCAAATTCTCAATCTTCGAAGTCATTGCAAAAGTCCAGTTCCCGTTCTAGATCAAGAGCAGTGTCTTCTAGATCACATTCTTCATCATCCAAAATAAGGTCTTTATCCGTATCACTCAATCAGCATTCATCATCTCCAAGCAAAATACAGTTAAATTCAAAAGGCTCATCCATTAATGGTACTGCTGTTGAAACTGTGGATCACTTACCTGCACAGTTGGAGATTTCTCAATCCAAGGACACAGGTGTTACTGTAAATGGGAAAGCTGCAGCAGTGTGTGACACATTTGTGTGTGCTGTGGAAAAGAGCCAATTTGTACAGGAGGATAATCATGAAAATCATATCTTATTAAAATCATCTGACAGAGTTACAGATCTAAATGAACCACCTGTTGAGAATTCATCTCCATTTATAGTAAAAGAGACAGAGGGTCTTAGTCATACTGGACAACATGTATTGAATCCTTCTCCTGAAACTAATGTTAATCTCCATCCCGACATTTCAACCATTGTATCTATGGAAGATATGCACATGGTTCTTAACAATTATGGCTTGGAAGTTCCAAAAGACGATGAAAACAATTTAACAGTTGATGCCTTCTATGGTTGTGCTCGGTTATGGCCTTGGCATCTTGTTTATTACCGTAAGTTGAAGAAAGGTCCAATTTCAACTGAGAATTATGCCAGACGGGTTGCTCAGAATCAGGAATTCGGCATTATAGATAAGTATATAAGAAGCAGTAGTGGATGGGGAGAGCTTGGTCTTCAGAACTCATAG	1806	0.4131	MSLYIGNLSEHSRRDELERVFRRFGQCNVQLKRDGYGFVVFDFPPDAEKALRALKGRNICGEELTLTWSNKQPNTHFSRFSRGGRRNGNEFRGKTGFRGWSNQKIGRENSVDAPDEERGYRHDGFKDYVGEEKDYGGDFPDEGGGIISKTEENDRWGEPVHDLVDNGNGNAIEFDRYEPYQGHDRKYENEDYHGGYPGGSPAANSQENVSRAHIVQGTSNRPSGSKFHQTCFRCGDPGHKMRNCPKEHSSQWRYSSLGVRQNSRIDKSHEDENKFGFAFQMRHQRGGRRLSVTRETYRPQRKEYGEKKRSRNEMELPKRSKAKIHKRSVSSSLPSDYSASRSLSNSQSSKSLQKSSSRSRSRAVSSRSHSSSSKIRSLSVSLNQHSSSPSKIQLNSKGSSINGTAVETVDHLPAQLEISQSKDTGVTVNGKAAAVCDTFVCAVEKSQFVQEDNHENHILLKSSDRVTDLNEPPVENSSPFIVKETEGLSHTGQHVLNPSPETNVNLHPDISTIVSMEDMHMVLNNYGLEVPKDDENNLTVDAFYGCARLWPWHLVYYRKLKKGPISTENYARRVAQNQEFGIIDKYIRSSSGWGELGLQNS*	602

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu7g2783	601	PANTHER	OS02G0536400 PROTEIN	3	597	-	-
	Pvu7g2783	601	ProSiteProfiles	Zinc finger CCHC-type profile.	231	246	IPR001878	GO:0003676\|GO:0008270
	Pvu7g2783	601	Gene3D	-	1	111	IPR012677	-
	Pvu7g2783	601	SMART	rrm1_1	2	67	IPR000504	GO:0003723
	Pvu7g2783	601	MobiDBLite	consensus disorder prediction	288	320	-	-
	Pvu7g2783	601	MobiDBLite	consensus disorder prediction	278	399	-	-
	Pvu7g2783	601	Gene3D	-	210	264	-	-
	Pvu7g2783	601	SMART	c2hcfinal6	230	246	IPR001878	GO:0003676\|GO:0008270
	Pvu7g2783	601	SUPERFAMILY	Retrovirus zinc finger-like domains	218	249	IPR036875	GO:0003676\|GO:0008270
	Pvu7g2783	601	Pfam	Zinc knuckle	230	246	IPR001878	GO:0003676\|GO:0008270
	Pvu7g2783	601	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	3	64	IPR000504	GO:0003723
	Pvu7g2783	601	SUPERFAMILY	RNA-binding domain, RBD	2	98	IPR035979	GO:0003676
	Pvu7g2783	601	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	1	71	IPR000504	GO:0003723
	Pvu7g2783	601	MobiDBLite	consensus disorder prediction	327	399	-	-
	Pvu7g2783	601	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	3	597	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu7g2783	3	93	Eukaryotic Initiation Factors Gene Family	AT2G23350	31.683	2.15e-06	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu7g2783	-		-	vun:114192668	1001.12

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu7g2783	7	50848384	50852513	Pvu7g2783	7	50848384	50852513	ECH