Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2757 ATGGACGAAATCGACGTGCCTCCCTTCTTCCTCTGCCCTATTTCCCTCGAACTCATGAAGGACCCCGTAACAGTCTCCACCGGAATCACCTACGACCGCCACAGCATCGAGAAATGGCTCTTCGCCTCAAACAACGCCACGTGTCCCGTCACCAAGCAGCCCCTCCTCCCAGACCTCACTCCCAACCACACCCTCCGCCGTCTCATCCAGGCCTGGTGCACCGTCAACGCCTCCCACGGCATCCAACGAATCCCAACGCCAAAGCCCCCGGTCGACAAAACCATCATCCAAAACCTCCTCAAAGACGCTTCCGGCTCCCCGAACCTCCAGCTCCAGTGCCTCCGAACCCTCAAATCCATCGCTTCCGAGTCCCAAACCAACAAACGCTCCATCGAATCCGCAGGCGCGGTTAAATTCCTAGCTTCGGTTATAACCAACACGATAAACTCATGTTTAGACGATGACGTGGAGCTGGAGTTGAAAGCAAGCGTTGCAGATGAAGCATTGAGCTTATTACACAACATTCAGTTATCCGAACCGGGTTTGAAGACTCTGCTGAGTCACCCCGAGTTTACACACTCGTTAACCAAGGTTATGCAGAAAGGAATCTACGAGTCACGCGCTTACGCTGTTTTTCTGCTGAAGTCGTTGTCGGAAGTGGCGGATCCGGTGCAGTTGATTAACCTAAAACCGGAACTGTTCATCGAACTGGTTCAGGTCCTTAAGGATCAGATTTCGCAGAAGGCTTCCAAGGCCACGCTTCAGACACTGATTCAGGTGTGTCCGTGGGCGAGGAACAGGGTGAAAGCGGTGGAGGCCGGGGCGGTGCCGGTCATCGTGGAGCTTCTTCTGGAATGCAGGGAAAGGAAGCCCTGCGAGATGATGCTTGTGTTGCTGGAGATTCTGTGTCAGAGCGCGGACGGGCGGGCGGAGTTGCTGGCGCACGCGGCGGGGGTGGCGATCGTGGCGAAGAAGATTTTGAGGGTGTCGACGACGGCGAACGACAGGGCGGCGAAGATTCTGTTGGCCGTGTGTAGATTCTCGGCGACGCCGAGCGTGGTGCAGGAGATGGTGCAGCTGGGGGTGGTTGCGAAGCTCTGCTTGGTGCTGCAGGTGGATAGTGGGAACAAGGCGAAGGAAAAAGCCAGGGAGATTCTGAAACTGCACGCCAAAGCGTGGAAGAACTCGCCTTGCATACCTGGTCACTTGCTTGCTTCGTTCCCAATCACTTCTTGA 1236 0.5574 MDEIDVPPFFLCPISLELMKDPVTVSTGITYDRHSIEKWLFASNNATCPVTKQPLLPDLTPNHTLRRLIQAWCTVNASHGIQRIPTPKPPVDKTIIQNLLKDASGSPNLQLQCLRTLKSIASESQTNKRSIESAGAVKFLASVITNTINSCLDDDVELELKASVADEALSLLHNIQLSEPGLKTLLSHPEFTHSLTKVMQKGIYESRAYAVFLLKSLSEVADPVQLINLKPELFIELVQVLKDQISQKASKATLQTLIQVCPWARNRVKAVEAGAVPVIVELLLECRERKPCEMMLVLLEILCQSADGRAELLAHAAGVAIVAKKILRVSTTANDRAAKILLAVCRFSATPSVVQEMVQLGVVAKLCLVLQVDSGNKAKEKAREILKLHAKAWKNSPCIPGHLLASFPITS* 412
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2757 411 SUPERFAMILY RING/U-box 3 80 - -
Pvu7g2757 411 PANTHER WDSAM1 PROTEIN 1 408 IPR045185 GO:0061630
Pvu7g2757 411 SUPERFAMILY ARM repeat 95 383 IPR016024 -
Pvu7g2757 411 SMART Ubox_2 9 72 IPR003613 GO:0004842|GO:0016567
Pvu7g2757 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Pvu7g2757 411 Gene3D - 93 396 IPR011989 -
Pvu7g2757 411 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Pvu7g2757 411 ProSiteProfiles U-box domain profile. 5 79 IPR003613 GO:0004842|GO:0016567
Pvu7g2757 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 408 - -
Pvu7g2757 411 CDD RING-Ubox_PUB 10 53 IPR045210 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pvu7g2757 Pvu-Chr7 50592942 50594640 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2757 2 408 U-box Gene Family AT2G35930 56.522 1.19e-171 484
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2757 - - gmx:100785598 664.455
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2757 7 50592942 50594640 Pvu7g2757 7 50592942 50594640 ECH
Pvu7g2757 7 50592942 50594640 Pvu1g2032 1 46225228 46226832 PCT