Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2751 ATGCAAACTGCTTACCTGAAAGAACACGAAGGAATTGTTCACAATTCTGTTGGACAATTGTCATCTGCAACTTCAGCTCCATGGTTGAATGGCTTAGGATCTCAACCAGTCTGTGGGGATTATTGTGGCCAAAGCAAGCCCTTTTCTTTGGAGTTTTCCAACTATGTCGACCAACTTGCTGGTGATGATTGTAAAATGTTGGGCGATGGCCAAAATCCTCCGGCAACCTTAGCACCGCAGTCATCAGTTGCTGAGCCCCCCAACCATTTGGAGTTAGGGTTTAATCAGCCTATGATCTGTGCGCCATATCCCTGTATGGATCAGTTTTGTGGGCTCGTTTCAGCTTATGGACCTCAAATTCCGGGACGTATAATGCTTCCGCTTAACATGGCTTCTGATGATGGACCAACCTACGTGAATGCTAAGCAGTACCATGGAATCATCAGACGCAGGCAGTCACGCGCGAAGGCAGTTCTTGAGAATAAAATGGTTAAACGTCGCAAGCCTTACATGCATGAATCACGCCATCTGCATGCAATGAGGAGACCAAGAGGAAATGGTGGTCGCTTCTTGAACACAAGAAACTCCAGCAATGAAAATGGTGGAAATGATGTTGAAGGGAATCAAATGGGTGGCCTACAATTTCTGTCTAGTGCCTCTCAGAGTTCTGAAATGATGCAATCTGATGTTGGAATGCATTCACCAATGGAGACAGATCAATACAGTCCAAACATGTCTAGTTCAGAAGTGAGTAGCATGTATTCAAGGGAAGGTTTCGATGGCTTTTCTGTTCATCCTCTTGGATCTTCTTCTGTTCATCCTCTTGGATCTTCTTCTGTTCATCCTCTTGGATCTTCTTCCGTTCATCCTCTTGGATCTTCTGTCCATTCTATAGCAGACATGATAGGTAGTGGAAATGGTATCACCATGCCCACTAGATGGGCTTAA 948 0.4494 MQTAYLKEHEGIVHNSVGQLSSATSAPWLNGLGSQPVCGDYCGQSKPFSLEFSNYVDQLAGDDCKMLGDGQNPPATLAPQSSVAEPPNHLELGFNQPMICAPYPCMDQFCGLVSAYGPQIPGRIMLPLNMASDDGPTYVNAKQYHGIIRRRQSRAKAVLENKMVKRRKPYMHESRHLHAMRRPRGNGGRFLNTRNSSNENGGNDVEGNQMGGLQFLSSASQSSEMMQSDVGMHSPMETDQYSPNMSSSEVSSMYSREGFDGFSVHPLGSSSVHPLGSSSVHPLGSSSVHPLGSSVHSIADMIGSGNGITMPTRWA* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2751 315 PRINTS CCAAT-binding transcription factor subunit B signature 136 158 IPR001289 GO:0003700|GO:0006355
Pvu7g2751 315 PRINTS CCAAT-binding transcription factor subunit B signature 167 190 IPR001289 GO:0003700|GO:0006355
Pvu7g2751 315 MobiDBLite consensus disorder prediction 189 249 - -
Pvu7g2751 315 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 283 314 - -
Pvu7g2751 315 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 61 276 - -
Pvu7g2751 315 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 2 60 - -
Pvu7g2751 315 ProSiteProfiles NF-YA/HAP2 family profile. 133 193 IPR001289 GO:0003700|GO:0006355
Pvu7g2751 315 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 136 190 IPR001289 GO:0003700|GO:0006355
Pvu7g2751 315 Gene3D - 134 194 - -
Pvu7g2751 315 SMART cbf3 132 193 IPR001289 GO:0003700|GO:0006355
Pvu7g2751 315 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 61 276 IPR001289 GO:0003700|GO:0006355
Pvu7g2751 315 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 283 314 IPR001289 GO:0003700|GO:0006355
Pvu7g2751 315 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 60 IPR001289 GO:0003700|GO:0006355
Pvu7g2751 315 MobiDBLite consensus disorder prediction 181 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2751 Pvu-Chr7 50525609 50531269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2751 20 268 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.279 8.92e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pvu7g2751 CBFB_NFYA 5.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2751 K08064 - gmx:100808195 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2040 1 46297378 46303053 Pvu7g2751 7 50525609 50531269 PCT