Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2749 ATGATTTCATATCATCATCAACATAAAAGGTCACAGTTGCCATCTGCTCCCAGGAGAAGAACTTCCACTGGCCCACAATTCCTTGAGCCACACCACACCATTGTTGATGTTGGACTAGATGAAGCCACAATCATGAACTACCCCAAGATGCTGTACTCTGAAGCCAAGCAGAGGAAATCTGATTCCACTGCAACAAGCTGTTCCATATGTCTGGGAGATTACAAAAGTTCTGATGTGCTAAGGGTATTGCCAGATTGTGAACATGTGTTTCACCTGAAGTGCATAGATCCATGGTTGAGGCTGCATCCAACTTGTCCTCTCTGCAGAACATCTCCTATCCCAACACCTCTCTCAACACCTCTTGCAGAAGTTGTCCCATTAGCAACAAGGCGAGATTAA 399 0.4511 MISYHHQHKRSQLPSAPRRRTSTGPQFLEPHHTIVDVGLDEATIMNYPKMLYSEAKQRKSDSTATSCSICLGDYKSSDVLRVLPDCEHVFHLKCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2749 132 SUPERFAMILY RING/U-box 44 114 - -
Pvu7g2749 132 SMART ring_2 67 108 IPR001841 -
Pvu7g2749 132 CDD RING-H2_PA-TM-RING 67 109 - -
Pvu7g2749 132 Pfam Ring finger domain 66 109 IPR001841 -
Pvu7g2749 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 113 IPR013083 -
Pvu7g2749 132 MobiDBLite consensus disorder prediction 1 27 - -
Pvu7g2749 132 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 131 IPR045899 -
Pvu7g2749 132 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 8 131 - -
Pvu7g2749 132 ProSiteProfiles Zinc finger RING-type profile. 67 109 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2749 Pvu-Chr7 50509285 50510263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2749 38 129 C3H Transcription Factor Family AT2G35910 72.826 7.49e-44 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2749 - - pvu:PHAVU_007G266900g 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2042 1 46325583 46326362 Pvu7g2749 7 50509285 50510263 PCT