Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2748 ATGGATTCCAAAAACATGGCAAAGAAGAACCTCAAAAAGACCAGAGGTCGTCAAAAGATTGAGATAAAAAAGATGAGCAATGAGCACAACCTTCGTGTCACATTCTCCAAGCGTCGTACTGGGATTTTCAAGAAAGCAAGTGAGCTTGCTACCCTCTGTGGTGTGGACATCGCTGTGATCATGTTTTCACCAAGTAGTCAGATATTCTCTTTCGGAAGCCCTAACGTGGATCCTGTTATCCAACGCTACACGGCGCAAGGACCACCTCCCCTCCTCACGTTGGACCTCAACGAGGCTCACAGCACCGTGGACGAGGGAGAACTCCATGCTCAACTCAACAACTTGTCTGACCAGATGACTGCGGAGAAGAAGCATGAAGAGGCTCTCAAACGTCTGATGAAGGATGTGGAGGAACACTCTTGGTGGGCCATACCGATGGAAAACATGAATGATTCACAACTCGAGAAGTGCAAGAAGATGTTGGAGGATCTGAAGGAACGTGTGAATGAGAAACGTGAGAAACTCCTCCTTCAGAGCACTTTTTCTTATAACTCACAAACTCAGTTTTTCACAGGTGGAAACTCCTTTTCAAGTGTGAATAACACTGAGACTATACATCCACCATTGTCGTTGTAG 636 0.4607 MDSKNMAKKNLKKTRGRQKIEIKKMSNEHNLRVTFSKRRTGIFKKASELATLCGVDIAVIMFSPSSQIFSFGSPNVDPVIQRYTAQGPPPLLTLDLNEAHSTVDEGELHAQLNNLSDQMTAEKKHEEALKRLMKDVEEHSWWAIPMENMNDSQLEKCKKMLEDLKERVNEKREKLLLQSTFSYNSQTQFFTGGNSFSSVNNTETIHPPLSL* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2748 211 Coils Coil 154 178 - -
Pvu7g2748 211 CDD MADS_MEF2_like 16 83 IPR033896 GO:0000977|GO:0045944
Pvu7g2748 211 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 15 174 - -
Pvu7g2748 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 71 IPR002100 GO:0003677|GO:0046983
Pvu7g2748 211 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Pvu7g2748 211 Gene3D - 27 89 IPR036879 GO:0003677|GO:0046983
Pvu7g2748 211 SUPERFAMILY SRF-like 16 92 IPR036879 GO:0003677|GO:0046983
Pvu7g2748 211 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Pvu7g2748 211 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Pvu7g2748 211 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Pvu7g2748 211 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Pvu7g2748 211 Coils Coil 8 28 - -
Pvu7g2748 211 PANTHER MADS BOX PROTEIN 15 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2748 Pvu-Chr7 50505677 50507104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2748 11 211 Type I MADS-box Gene Family AT5G60440 39.904 2.87e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu7g2748 SRF-TF 5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2748 - - ccaj:109815930 250.366