Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2738 ATGGAGGTGCCGGAAATGGGAGGCAAGACCGAAAGTCACATGACATCGGCGGCAGCCTTTGTGGAAGGGGGGATTCAAGAAGCATGTGATGATTCTTGCAGCATATGCCTTGAGGAATTTTGCAAAAGTGATCCTGCAACTGTCACTAATTGCAAGCACGATTTCCATCTGCAGTGCATTCTTGAATGGTCTCAGAGAAGCTCTCAATGCCCTATGTGTTGGCAGGCTATCAGCTTGAAGGATGCTACCAGCCAAGAACTGCTCGAGGCAGTAGAGATGGAGAGGAGCTTGAGGGATACCCCATCAAGAAATGCTGCAATTTTTCATCATTCAGAAGTTGGTGATTTTGAATTGCAGCGTTTACCCATGGGACATGAGTCTGATATTGAAGAGCGGATCATTCGACATTTAGCTGCTGCAGCATCAATGCGAAGAGCACACCTTCTCGGCCAGAGGGAAAGTCATCGATCTAGGTCATCTGCACATGGCCATCCACACTACTTTGTGTACTCAACTCAGCCTAGTGCACCTCCATCAGCTGCTGGAGGGGGAAGTGAACCAGCTGCAATTCCTGCTGGAAATCCATCGGCTCCTCTTATATTTGATGGAACAGAGCAATCATCACCGGAGCAGATGCCTCTATTCCAAACTAGGGGTTCTTCTTTGACTTCTGGCTCTTCAGTCACGACAACAAATCTTCAAGGATTTCACTCTAATCATAGAAGCTTTGCCTCTCATTCCTTGCCTGCAAGCCATGATGAACCACAGCCATCACAGCCATCAGAACAATCATTCTCAGATTCTCTCCTTTCCAAATTTAATGCAGTGTCCATGAGATACAAAGAATCAATTTCAAAGGGCACAAGGGGATGGAAGGAGAGGCTGTTCTCTCCTAATTCTTCTGTGTCAGAACTTGGTTCAGAAGTTAGGAGAGAATTGAATGCCAAAATTGCTAGTGTGTCCCGATTAATGGAGCGCCTCGAAACAGCAAGAGAAAATAATAGCGCCGCAGGCACTTCTTTATCAAATCATTCCATTGCAGAGACAAGCAACCAAAACAATGTGGAAGTTCGTGGAGAGAACTCTTTTCGTGGCAGTAATACTCCTGCTACATTTTCTGCTAGCCCAGATGCAAACTGA 1140 0.4614 MEVPEMGGKTESHMTSAAAFVEGGIQEACDDSCSICLEEFCKSDPATVTNCKHDFHLQCILEWSQRSSQCPMCWQAISLKDATSQELLEAVEMERSLRDTPSRNAAIFHHSEVGDFELQRLPMGHESDIEERIIRHLAAAASMRRAHLLGQRESHRSRSSAHGHPHYFVYSTQPSAPPSAAGGGSEPAAIPAGNPSAPLIFDGTEQSSPEQMPLFQTRGSSLTSGSSVTTTNLQGFHSNHRSFASHSLPASHDEPQPSQPSEQSFSDSLLSKFNAVSMRYKESISKGTRGWKERLFSPNSSVSELGSEVRRELNAKIASVSRLMERLETARENNSAAGTSLSNHSIAETSNQNNVEVRGENSFRGSNTPATFSASPDAN* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2738 379 MobiDBLite consensus disorder prediction 200 267 - -
Pvu7g2738 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 90 IPR013083 -
Pvu7g2738 379 MobiDBLite consensus disorder prediction 147 267 - -
Pvu7g2738 379 Coils Coil 310 333 - -
Pvu7g2738 379 MobiDBLite consensus disorder prediction 330 379 - -
Pvu7g2738 379 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Pvu7g2738 379 Pfam Ring finger domain 31 73 IPR001841 -
Pvu7g2738 379 SUPERFAMILY RING/U-box 25 80 - -
Pvu7g2738 379 SMART ring_2 33 73 IPR001841 -
Pvu7g2738 379 MobiDBLite consensus disorder prediction 332 379 - -
Pvu7g2738 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 9 374 - -
Pvu7g2738 379 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 9 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2738 Pvu-Chr7 50345138 50349987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2738 31 82 C3H Transcription Factor Family AT4G23450 48.077 6.89e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2738 K19043 - gmx:100802025 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2738 7 50345138 50349987 Pvu7g2738 7 50345138 50349987 ECH
Pvu1g2053 1 46407114 46411184 Pvu7g2738 7 50345138 50349987 PCT