Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2707 ATGGAATTGCCTACAGCTAATGTGGATCTTGGGCCTAAGAAGATTGAACATGAGAAAGAGGAAGGTCCCTTGTTACATTGTGATTTTTGTGACATAGAAGTAGTTCACAATCTGGCTCAAATGTTCATGCCAGGACTAGCCTGTGCCTGTGTTGATAACACAACAGGAGATCCCTTCAATACCCCTGGTTTTGTGGCTGTTGATTTGAGAAAGGAGATGATAGAATTTGTCACCCAAAAGAGTGAATTATTTGTTGCTGAGTCTATTATCTCTGAGGGTGGTCCTGATGGTGAAGCTTTGGAACACCCTTTTGATATTATTTCTTATTTTGTTGACGAGTTTGTTAATTCAAAGAGGAATTTGTGGAGCCAGTTTTCAGGGTGGTTGCTAAGTGACAAGAGAGAGGACAAAATAGATGATTTTATTCAGGAGATGGAAGTAAATGGTTTTTGGCCACTGGATAGAAGAGAAACACTTGCAAAAGATTTGCTCAAGAATGTTGACTTCAAGAGCTCATTTCATTGCAGTATGAGTTTTAACTCTGCCGAAGATCTTGCCAACCATGTTGATGCATGCGACTTCAGGACCGTGATATGCCAAAATGAGGGGTGCAATGTCAGATTCAGTGCTGGTCAATTGAAAGAGCATGATTCAACTTGTGATTTCAAGATAGTTCCATGTGAACAGAAGTGCACAGCTAACATCTTGAGACGTGAGATGGATAGACACTGCCTAACCGTTTGTCCACTAAAGCTTGTGAATTGCCCTTTCTCTGCCATAGGCTGTAGATCTACAACTGCACAAAGTATGATTAGAAAACATTGTTCAGATGATATTGAGTCTCACTTATTCCTAATGCTTAAAGGCATCCACCAGCCAGCGTCAAGCGAAGATCTTCAAAGACGTGTGGAGCAAATTGTACAGACATCATCAAGAAGCAAATTAGCAGAGGCTAAGGATGTGAGATCTTTTAAAAGGATTGTCAAGGACCTTGAAGTTAAGCTAGGGTCTCTAGAAGTGAGTGCCGAAGAGAAAACTAGTACAGAAGAAGTTGCCAAAAATGAAGATCGAGAAGAAAATAGAACTTCTGCAGTAAATGGTGTCAATAAAGAGGATAGTGAACACAGAAAATGA 1134 0.403 MELPTANVDLGPKKIEHEKEEGPLLHCDFCDIEVVHNLAQMFMPGLACACVDNTTGDPFNTPGFVAVDLRKEMIEFVTQKSELFVAESIISEGGPDGEALEHPFDIISYFVDEFVNSKRNLWSQFSGWLLSDKREDKIDDFIQEMEVNGFWPLDRRETLAKDLLKNVDFKSSFHCSMSFNSAEDLANHVDACDFRTVICQNEGCNVRFSAGQLKEHDSTCDFKIVPCEQKCTANILRREMDRHCLTVCPLKLVNCPFSAIGCRSTTAQSMIRKHCSDDIESHLFLMLKGIHQPASSEDLQRRVEQIVQTSSRSKLAEAKDVRSFKRIVKDLEVKLGSLEVSAEEKTSTEEVAKNEDREENRTSAVNGVNKEDSEHRK* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2707 377 ProSiteProfiles Zinc finger TRAF-type profile. 216 263 IPR001293 GO:0008270
Pvu7g2707 377 SUPERFAMILY TRAF domain-like 227 280 - -
Pvu7g2707 377 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 1 350 IPR043211 -
Pvu7g2707 377 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 1 350 - -
Pvu7g2707 377 MobiDBLite consensus disorder prediction 341 377 - -
Pvu7g2707 377 Pfam TRAF-type zinc finger 216 274 IPR001293 GO:0008270
Pvu7g2707 377 SUPERFAMILY TRAF domain-like 183 228 - -
Pvu7g2707 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 218 IPR013083 -
Pvu7g2707 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 280 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2707 Pvu-Chr7 50106420 50110978 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g2707 zf-TRAF 5.1e-11 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2707 - - vra:106769987 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2707 7 50106420 50110978 Pvu7g2707 7 50106420 50110978 ECH
Pvu1g2074 1 46568102 46569401 Pvu7g2707 7 50106420 50110978 PCT