Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2704 ATGGTTTGGGAATCAAACTCTCTCCCCTTTCTACCACACAGATTCCGTTGTTTCGCCATTTGTGAAGCAGGTGAAATAGCATTAAATATGAGGGGAAGAAGCTACAGTTACAGTCCTTCACCTCCAAGGCATTATAGCCGAAGAAGACGCAGTCCCAGCCCTAGGAGCCGTTACAGAGGACGTGATAGGGATTTGCCAACTAGTCTTTTGGTTCGAAACCTTCACAGAGATTGCAGGGCGGAAGATCTGCATGGTCCATTTGACCAATTTGGTCCTGTTAAGGACGTTTACCTGCCTCGAGATTATTATACTGGGGATCCAAGAGGTTTCGGGTTTGTCCAGTATGTGGACCCAGCTGATGCTGCGGATGCAAAACACCACATGGACGGTCAAATTCTTCTTGGTCGCGAGTTAACTGTAGTGTTTGCTGAAGAAAACAGGAAGAAACCTTCTGAAATGAGGGCAAGGGAACGGAGGAGGGATCGATCATATGATTACAGGCGATCGCCTCGAACCTATTCTCCTAGTCCAGACTATTCACCTCCTCCAAGACGAAGACGACATTACAGATCAATCTCACCAAGGGTTAGAAAATATAGCGATGGATCATACTCTAGATCACCTTATGGGTCAAGAAGCCGCAGCAGAAGCAGGAGTTATAGCAGAAGCAGAAGTTACAGCAGGAGCTTGAGCGCAAGTCATGAGTACTCTGGGTGA 717 0.4714 MVWESNSLPFLPHRFRCFAICEAGEIALNMRGRSYSYSPSPPRHYSRRRRSPSPRSRYRGRDRDLPTSLLVRNLHRDCRAEDLHGPFDQFGPVKDVYLPRDYYTGDPRGFGFVQYVDPADAADAKHHMDGQILLGRELTVVFAEENRKKPSEMRARERRRDRSYDYRRSPRTYSPSPDYSPPPRRRRHYRSISPRVRKYSDGSYSRSPYGSRSRSRSRSYSRSRSYSRSLSASHEYSG* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2704 238 MobiDBLite consensus disorder prediction 36 62 - -
Pvu7g2704 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Pvu7g2704 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 138 IPR000504 GO:0003723
Pvu7g2704 238 MobiDBLite consensus disorder prediction 198 238 - -
Pvu7g2704 238 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL33 30 226 - -
Pvu7g2704 238 MobiDBLite consensus disorder prediction 147 238 - -
Pvu7g2704 238 MobiDBLite consensus disorder prediction 147 168 - -
Pvu7g2704 238 SUPERFAMILY RNA-binding domain, RBD 67 171 IPR035979 GO:0003676
Pvu7g2704 238 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 30 226 - -
Pvu7g2704 238 SMART rrm1_1 68 141 IPR000504 GO:0003723
Pvu7g2704 238 Gene3D - 43 175 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2704 Pvu-Chr7 50097415 50100652 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2704 61 130 Eukaryotic Initiation Factors Gene Family AT3G11400 42.857 4.47e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2704 K12900 - gmx:100816913 207.994