Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2687 ATGGAACTGGCTTTGAGCTTAGGAGACACTTCCAAGTCCTTTGCTTTTCTCGACAAGCCTGTAAATTTACCCTCCAAGGACCCACCTGGGTTCTGCATAGCTCCGGGGAAAGCCTTTGAAGACAAAAGAACCGATGCTGAGAAAAGGGGTTCTTCAGATCCACCAGTTCAACTTGATCTTCTTCCTTTCACTCCCGTTCTCAGATCCCAACCTCCTTCCCAGCTTCGAATCCCTTGGCTCACTGAACCATGTGGAGCGGCGAGGGTGCTGGATGTAAATCTTTTTCCCTCGGCTGCGGAGGACGGCGATGACGGGACGTCGCTGTCGTCGCCGAGCAGTGCGGTGTCGCCGTTTCAGATGGATTTCAGCATAAGAAACGGTAATGCCGAGTTTGGAGGAAGAAACAAGAGGGAACAACAAGAGGGTGAAGGTACAAGAGTGAGCGATGACGAGGAAAATGGCTCGACTCGGAAGAAACTCAGACTCTCCAAAGAACAATCAGCTTTTCTGGAAGAAAGCTTCAAAGAACACACCACTCTCAATCCAAAGCAGAAACTTGCTTTGGCTAAACAGTTGAATCTCCTTCCTCGTCAAGTGGAGGTTTGGTTTCAGAACAGGAGAGCAAGAACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGATGCTGTGAGACTCTAACAGAAGAGAATAGAAGGTTGCAGAAGGAGCTTCAAGAACTAAGAGCCTTGAAAACTTCTCAACCCTTCTACATGCAGCTTCCAGCCACCACTCTCACCATGTGTCCCTCTTGTGAAAGGGTTGCCACAAATTCCACAACCACTAACCAAACTTCTTCCACCATTAACAACACTGCTTCTCAAATCCCTGTGGAGTTATCTCTAAGCAAGCCCAGAATACTGCCCTTCCCAAATGGGCAGGCCCAGGCAACCCAGGCCCAAGCCCAAACTCAAGCCCATCGGATAGCTTCTTCGTGA 984 0.4878 MELALSLGDTSKSFAFLDKPVNLPSKDPPGFCIAPGKAFEDKRTDAEKRGSSDPPVQLDLLPFTPVLRSQPPSQLRIPWLTEPCGAARVLDVNLFPSAAEDGDDGTSLSSPSSAVSPFQMDFSIRNGNAEFGGRNKREQQEGEGTRVSDDEENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSTTTNQTSSTINNTASQIPVELSLSKPRILPFPNGQAQATQAQAQTQAHRIASS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2687 327 SMART halz 213 256 IPR003106 GO:0006355|GO:0043565
Pvu7g2687 327 SMART HOX_1 155 217 IPR001356 GO:0003677
Pvu7g2687 327 PANTHER - 2 312 - -
Pvu7g2687 327 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 312 - -
Pvu7g2687 327 MobiDBLite consensus disorder prediction 100 119 - -
Pvu7g2687 327 Coils Coil 219 249 - -
Pvu7g2687 327 CDD homeodomain 157 214 IPR001356 GO:0003677
Pvu7g2687 327 MobiDBLite consensus disorder prediction 103 119 - -
Pvu7g2687 327 CDD bZIP 206 245 - -
Pvu7g2687 327 SUPERFAMILY Homeodomain-like 149 214 IPR009057 -
Pvu7g2687 327 Pfam Homeodomain 157 211 IPR001356 GO:0003677
Pvu7g2687 327 ProSiteProfiles 'Homeobox' domain profile. 153 213 IPR001356 GO:0003677
Pvu7g2687 327 Gene3D - 161 211 - -
Pvu7g2687 327 MobiDBLite consensus disorder prediction 131 160 - -
Pvu7g2687 327 Pfam Homeobox associated leucine zipper 213 247 IPR003106 GO:0006355|GO:0043565
Pvu7g2687 327 ProSitePatterns 'Homeobox' domain signature. 188 211 IPR017970 GO:0000981|GO:0006355
Pvu7g2687 327 MobiDBLite consensus disorder prediction 126 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2687 Pvu-Chr7 49902764 49905002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2687 55 279 Homeobox Transcription Factor Family AT5G47370 55.508 2.40e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu7g2687 Homeodomain 5.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2687 K09338 - gmx:100776113 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2687 7 49902764 49905002 Pvu7g2687 7 49902764 49905002 ECH
Pvu1g1492 1 39332600 39334158 Pvu7g2687 7 49902764 49905002 PCT