Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2670 ATGGACCTTCGCAAGCGTGGAAGGCCCGAACCCGCCGTCAGCCTTAACGGCGCCGTTAAGAAGACCAAGCAAGACTTGGAGTCCTTATCAGGTGGTGTAGGAAGCAAATCGAAGCCCTGTACCAAGTTTTTCAGCACTGCTGGCTGCCCGTTTGGTGAGGGCTGCCATTTTTTGCATTATGTTCCTGGTGGTTATAATGCGGTTGCCCATATGATGAATTTAAAACCTGCAGCTCCTCCACCGAGAGCTGTTGCTGCACCCCCTCCGGTCCCTAATGGCTCTGCTCCATCTGCTGTTAAAACACGTATATGTAACAAGTTCAATACTGCTGAAGGGTGCAAATTTGGTGACAAGTGCCATTTTGCTCATGGTGAGTGGGAACTTGGCAAACCTATTGCTCCCTCAATTGATGATCATCGACCTTTGGGACCTCCAGCAGCTGGTCGTATGTCTGGTCGAATTGAGCCTCCTCCCTTGGCGGGTAGCTTTGGCGCCATTTCTACTGCCAAGATCAGTGTAGAAGCTTCTTTGGCTGGAGCTATTATTGGGAAGGGTGGTGTGAACTCGAAGCAGATCTGTCGCCAAACAGGAGCGAAACTTTCAATCCGAGAGCACGAGACTGATCCAAACCTTAGAAACATTGAACTTGAGGGAACTTTCGAACAGATAAAGGAGGCAAGTAATATGGTAAAAGATTTACTTTTGACTGTTTCAATGTCTGCCCCTCCCAAATCCAACCCAGGTGTTCCTGGTGCCCCGGCTCCTCCTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTGCAAAAGGATCTTGCACCTTTGGAGATCGATGCCACTTTGCTCATGGAGCTGGCGAATTGCGCAAGCAGGGGGTATGA 882 0.4955 MDLRKRGRPEPAVSLNGAVKKTKQDLESLSGGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLKPAAPPPRAVAAPPPVPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSIDDHRPLGPPAAGRMSGRIEPPPLAGSFGAISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHETDPNLRNIELEGTFEQIKEASNMVKDLLLTVSMSAPPKSNPGVPGAPAPPGSNFKTKLCENFAKGSCTFGDRCHFAHGAGELRKQGV* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2670 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Pvu7g2670 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 284 IPR000571 GO:0046872
Pvu7g2670 293 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Pvu7g2670 293 CDD KH-I 168 231 - -
Pvu7g2670 293 Pfam KH domain 169 231 IPR004088 GO:0003723
Pvu7g2670 293 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Pvu7g2670 293 SUPERFAMILY CCCH zinc finger 259 289 IPR036855 GO:0046872
Pvu7g2670 293 ProSiteProfiles Type-1 KH domain profile. 166 230 - -
Pvu7g2670 293 SUPERFAMILY CCCH zinc finger 97 129 IPR036855 GO:0046872
Pvu7g2670 293 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Pvu7g2670 293 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 155 236 IPR036612 GO:0003723
Pvu7g2670 293 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Pvu7g2670 293 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Pvu7g2670 293 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 292 - -
Pvu7g2670 293 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Pvu7g2670 293 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Pvu7g2670 293 SMART c3hfinal6 259 285 IPR000571 GO:0046872
Pvu7g2670 293 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 292 - -
Pvu7g2670 293 Gene3D - 93 130 - -
Pvu7g2670 293 Gene3D - 258 291 - -
Pvu7g2670 293 Gene3D K Homology domain, type 1 164 257 IPR036612 GO:0003723
Pvu7g2670 293 SMART kh_6 165 235 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2670 Pvu-Chr7 49744488 49748916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2670 35 133 C3H Transcription Factor Family AT1G68200 26.263 1.37e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu7g2670 KH_1 8.8e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2670 - - gmx:100817463 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1476 1 39106940 39110116 Pvu7g2670 7 49744488 49748916 PCT