Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2660 ATGAGTTCTGGTTCAGTGACCAACGCACCACCCTCTTCCTCCTCCTCACCCAACTCTTCCACTGAGTCCCCTGATGGCTTGAAGTTTGGCCAGAAAATCTACTTTGAGGATGTGAGTGTTGCAGCTGCAGCAACAACTCAAGGGACCAAAACAAGTGGTGGGATTTCATCTTCTTCTTCTTCTTCAAAGAAGGGAAGGGGTGGTTCAGCTCAACCAGCTCAGCCTTCTAGATGTCAGGTTCAGGGTTGCAATGTAGATCTGAGTGGAGCTAAGGCTTACTATTCCAGGCACAAGGTTTGTGCCATGCATTCCAAGTCCCCAACTGTCATTGTGGCTAGTCTGGAACAAAGGTTTTGCCAACAGTGTAGCAGGTTTCATATGCTTTCTGAATTTGATCAAGGAAAGCGAAGCTGCCGCCGGCGACTTGCTGGCCATAATGAGCGCCGGCGAAAGCCTCCTCCCAGCTCCATATTTACCTCTCGCTATGGCAGGCTTTCTTCCCCTATTTTTGATAACAATGGCAGAGCTGGTAGCTTTCTGATGGAATTTGCTTCATATCCAAAGCTTTCATTGAGAAACACCTTGCCAACTCCAAGATCAGACGAGCCACTACCCGGAAACCATGCTGCAGCATTAACCTGGCAGGGCAGCTCAGAAACAGCATCTGAATTTTTTCTGCATGGATCAGGGAGTGGTGGAACAAGCTTCCTTGGTTCCAAACATCCTTTAATGGAAAGCTACACCACTGACTCAAACTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCCAGGACCACACAACCAAGTGTTGAGCTCAACAACAACAACCACAACTTGTTGAATTTCAATGGGAGCTCCATGGCACAATTCACTGCTGCTTCCTCACAAGTTGCAGCCATGCATCAACTTCCAAATGCCACCTCATGGTACCTGAAGGCCGTTGACTCGCCGGAGGATGTTCCCGATCTCGGCCTTGGCCAAATTTCGCCGTCTCTTCATAGCCATCTTCATGGTGAGCTTGATGTGCCACATCAGGGTAGGCACTACATGGATCTTGAGGAATCCAGGGCCTGTGAGTCTTCTCACTGGTCACTTTAA 1104 0.4873 MSSGSVTNAPPSSSSSPNSSTESPDGLKFGQKIYFEDVSVAAAATTQGTKTSGGISSSSSSSKKGRGGSAQPAQPSRCQVQGCNVDLSGAKAYYSRHKVCAMHSKSPTVIVASLEQRFCQQCSRFHMLSEFDQGKRSCRRRLAGHNERRRKPPPSSIFTSRYGRLSSPIFDNNGRAGSFLMEFASYPKLSLRNTLPTPRSDEPLPGNHAAALTWQGSSETASEFFLHGSGSGGTSFLGSKHPLMESYTTDSNCALSLLSNQTWGSRTTQPSVELNNNNHNLLNFNGSSMAQFTAASSQVAAMHQLPNATSWYLKAVDSPEDVPDLGLGQISPSLHSHLHGELDVPHQGRHYMDLEESRACESSHWSL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2660 367 Pfam SBP domain 78 151 IPR004333 GO:0003677
Pvu7g2660 367 MobiDBLite consensus disorder prediction 1 26 - -
Pvu7g2660 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 367 IPR044817 GO:0003677
Pvu7g2660 367 MobiDBLite consensus disorder prediction 1 27 - -
Pvu7g2660 367 ProSiteProfiles Zinc finger SBP-type profile. 75 152 IPR004333 GO:0003677
Pvu7g2660 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 1 367 - -
Pvu7g2660 367 MobiDBLite consensus disorder prediction 45 78 - -
Pvu7g2660 367 Gene3D - 68 139 IPR036893 GO:0003677|GO:0005634
Pvu7g2660 367 SUPERFAMILY SBT domain 76 157 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2660 Pvu-Chr7 49641299 49646164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2660 27 367 SBP-box Gene Family AT2G42200 40.897 2.38e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu7g2660 SBP 5.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2660 - - vra:106770061 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2660 7 49641299 49646164 Pvu7g2660 7 49641299 49646164 ECH
Pvu1g1467 1 38925229 38929516 Pvu7g2660 7 49641299 49646164 PCT