Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2647 ATGGATTCCCATACCCATCATCATCATCATCATCATCAGGATTACCAACTTCATCTCCATCAGAACCAACCCTCCTCTGGGTTGCTTCGTTTTCGCTCTGCACCCAGTTCACTCCTTTCAAATCTCACGCCTTTCGTCAGCTTCGGTGGTGACACTGCTGCTTCAAGTAGCTTCCAGGAGTTGGAAGAAAAGAACAACCACAACTGTTGTTCTGAGGATTTGAGTTCGATGAATTCGCATAAGGGTTATGGTGGGGGGTTGCCACCTCACTATCCAAGACATGGTTCTTCTTCTGCTACTTCGAGCTCTTCTATGGAAGGGTCTTATGGGTTGGTGGCTTCAATGGGGATGGACCATGAAGCTCCAAATAAGGGGTTTGGGTCAGGTCTTCTCAGGCAGAGTAGCTCTCCTGCTGGCCTTTTCTCCAACAACAACGTTTCCTTCCAAAATGGGTTTGTCACCATGAAAGGTGTAGGAAACTATGGTGGGGTGAATGACAATAATGGTGAACTTAGTCCATGTATTAGCAGGTTGAAGAATCATATTAGCTTCTCACCAAGAAATTCTTCTTCCCTGGGAATGTTGTATCAGATCTCTGAAATAGGGAGTGAAGACATTGAGGCAACTAGTCCTGATGATGATGCCAGTCATGGAGGTAATGATACTCAACATTTTGGCCCTGGATTCCCCTATGGTTCTTGGAGTGAGACTCCACAACTCTGTGAAAATCTCAGTGGCTTGAAAAGAGGGAGAAGTGACAATGAAAAGATCTTTTCTGAAGTTCAGAATGGAGAGCCAGGAACTCAAGTCAATGTATTATCACATCACTTGAGTTTACCAAAAACTTCAGCAGAGATGATTACCATGGAGAAGTTGCTTCAGTTCCCTGATTCTGTTCCTTGTAAAACCAGAGCAAAGCGAGGGTGTGCTACTCATCCTCGAAGCATTGCTGAAAGGGTGAGAAGAACTCGGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTCCCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGACTCTTTGTGATAAACGAGCAAACTGCAAGTGTTCAAGCATGCAAAAGGCAGATTCATGA 1152 0.441 MDSHTHHHHHHHQDYQLHLHQNQPSSGLLRFRSAPSSLLSNLTPFVSFGGDTAASSSFQELEEKNNHNCCSEDLSSMNSHKGYGGGLPPHYPRHGSSSATSSSSMEGSYGLVASMGMDHEAPNKGFGSGLLRQSSSPAGLFSNNNVSFQNGFVTMKGVGNYGGVNDNNGELSPCISRLKNHISFSPRNSSSLGMLYQISEIGSEDIEATSPDDDASHGGNDTQHFGPGFPYGSWSETPQLCENLSGLKRGRSDNEKIFSEVQNGEPGTQVNVLSHHLSLPKTSAEMITMEKLLQFPDSVPCKTRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLCDKRANCKCSSMQKADS* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2647 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 373 IPR036638 GO:0046983
Pvu7g2647 383 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 379 - -
Pvu7g2647 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 309 359 IPR011598 GO:0046983
Pvu7g2647 383 MobiDBLite consensus disorder prediction 206 226 - -
Pvu7g2647 383 SMART finulus 315 365 IPR011598 GO:0046983
Pvu7g2647 383 Gene3D - 310 381 IPR036638 GO:0046983
Pvu7g2647 383 PANTHER TRANSCRIPTION FACTOR BHLH130 19 379 - -
Pvu7g2647 383 CDD bHLH_AtbHLH_like 314 366 IPR045239 -
Pvu7g2647 383 MobiDBLite consensus disorder prediction 80 105 - -
Pvu7g2647 383 Pfam Helix-loop-helix DNA-binding domain 314 360 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2647 Pvu-Chr7 49524839 49528381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2647 18 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 46.917 2.70e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu7g2647 HLH 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2647 - - gmx:100819605 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2647 7 49524839 49528381 Pvu7g2647 7 49524839 49528381 ECH
Pvu7g2647 7 49524839 49528381 Pvu7g0022 7 136965 141398 ECH
Pvu1g1442 1 38622966 38625891 Pvu7g2647 7 49524839 49528381 PCT