Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2644 ATGGAGCAAACCACGCTTGAAGCCATTCAGTTCAACGAGGAAATCCAAGGCATCATAGCTCCGGCGCCGGAAACCGCAAGTTCCTTCACCGCACTGCTGGAGCTCCCGCCGACGCAGGCCGTCGAGCTCCTCCACTCGCCGGACCGAGCCGGGAAGCCACCGCGCCATAATCCGAAACCCTACCCGTTGACCTCATTTGCCTCCGCCTCCGCCGCCAACCTGACCTTCCCGTCAAACGCCGCGCTGATCGAACGCGCCGCCAGGTTCTCCATCTTCGCCGGAGAGAATTCTAACTCGAACTCGAACTCGAACTCGCCGGAGGTTAAGCGAGAGCTGCCGGAGACCGATTCCAACCCGAGTTCGACTCAGGGCGGCGGCTCCGCCTCCGATCCCACCCTGGAGAACAAGGATGAGAAGGGCCTGAAGAGGAAGGAGCGAGAGAAGAAGGTTAAGGCGTCGTCGAAGAAGAGCAAGAGCGTAGTCGCTGACGAGAGTTCCGGCGACGGCGAGAAGCTTCCGTATGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGAATGAAGCTTTTGCAAGAGCTGGTCCCGGGTTGCAACAAGATATCAGGAACAGCATTGGTTCTGGATAAAATCATCAACCATGTACAATCTCTACAGCATGAAGTGGAGATATTATCAATGAAACTGGCAGCAGTAAATCCAGTAATTGATTTCAACCTTGACAGCTTATTGGCTACCGAAGGAGTGTCTCCAATGGACTGTAACTTCCCTCCCACAGTTGCACCCGCCGTCTGGCCAGAAATCCCGCAGAATGCAAACAGACAACAATATCAGCAACCGTGGCAGTTCGATGCATTCCACCACCAGGCCATTTGGGGCAGGGAAGAAGACAACACTAATTTCATGACTCCAGAAAACTCACTCTTGAGTTATGACTCATCGGCAAATTCAGTATCTCTGCATTCAAATCAGTTGAAGATGGAGCTCTGA 1035 0.5333 MEQTTLEAIQFNEEIQGIIAPAPETASSFTALLELPPTQAVELLHSPDRAGKPPRHNPKPYPLTSFASASAANLTFPSNAALIERAARFSIFAGENSNSNSNSNSPEVKRELPETDSNPSSTQGGGSASDPTLENKDEKGLKRKEREKKVKASSKKSKSVVADESSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPVIDFNLDSLLATEGVSPMDCNFPPTVAPAVWPEIPQNANRQQYQQPWQFDAFHHQAIWGREEDNTNFMTPENSLLSYDSSANSVSLHSNQLKMEL* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2644 344 Gene3D - 180 251 IPR036638 GO:0046983
Pvu7g2644 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 252 IPR036638 GO:0046983
Pvu7g2644 344 SMART finulus 189 239 IPR011598 GO:0046983
Pvu7g2644 344 Pfam Helix-loop-helix DNA-binding domain 187 234 IPR011598 GO:0046983
Pvu7g2644 344 MobiDBLite consensus disorder prediction 94 168 - -
Pvu7g2644 344 MobiDBLite consensus disorder prediction 45 64 - -
Pvu7g2644 344 MobiDBLite consensus disorder prediction 132 168 - -
Pvu7g2644 344 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 344 - -
Pvu7g2644 344 CDD bHLH_AtBPE_like 173 258 - -
Pvu7g2644 344 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 344 IPR024097 GO:0006355
Pvu7g2644 344 MobiDBLite consensus disorder prediction 94 108 - -
Pvu7g2644 344 MobiDBLite consensus disorder prediction 115 130 - -
Pvu7g2644 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 233 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2644 Pvu-Chr7 49481470 49489122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2644 2 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 49.602 1.35e-92 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu7g2644 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2644 - - gmx:100799133 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2644 7 49481470 49489122 Pvu7g2644 7 49481470 49489122 ECH
Pvu1g1438 1 38532766 38543942 Pvu7g2644 7 49481470 49489122 PCT