Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2630 ATGGGAGACCCTTACTCCAATTTCTTCTCACCACCTTTCTTCCACTACCCCTCTCCAAACCCTCCCCCCCACCACCATCCATATGCTCACAACTTCATCAACCAAACCACCACCACCACCAACATCAACCACACCACCTTTTTCCACTTCCAACACCACCACCACTTTCAAACCACTACCACCACTTGTTCTTCTTCACCCCCTTCCCCTCCCTTGAGAGAGGCCCTTCCTCTTCTCAGTCTCAGCCCAAAAAATTATGAACAAGAGGAGTACCTGGATCAGGATCAGGTTTGCACTACCATGGATGTGGAAGACAACTTCAACAGGACCCTCCATAACCCCAAAGAAGAGGAGCAAGAAGAGGATGGTGGTGATGACAGTGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATAGCTTCTGTGCTGTCTTCAGCTTGTGCCACAGACAAAGAGCAACAGCAAGGGGGAGGTGGAGGAGATTGTAATAATAATGGGATTCAGGATTCTTCTTCATCCTTCTTGTCCAACAGCCTCAACAAGGGACAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCTCTTGTCCAGTTTGTTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCACGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGTATGCTTAGGCTTCCATGCTATTGTTGTTCCCCAGGATGCAGGAACAACATTGATCACCCAAGAGCAAAGCCCCTTAAAGATTTCAGAACTCTTCAAACACACTACAAGAGGAAGCATGGAATCAAGCCCTTCATGTGTAGAAAATGTGGTAAGAGTTTTGCAGTGAGAGGTGATTGGAGGACCCATGAAAAGAACTGTGGGAAGCTTTGGTATTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCTCTTAAAGATCACATCAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGAATCGATGGCTTTGAAGAAGAAGAAGAGCCTGCATCTGAAGTAGAACAAGACAATGACTAA 1089 0.472 MGDPYSNFFSPPFFHYPSPNPPPHHHPYAHNFINQTTTTTNINHTTFFHFQHHHHFQTTTTTCSSSPPSPPLREALPLLSLSPKNYEQEEYLDQDQVCTTMDVEDNFNRTLHNPKEEEQEEDGGDDSVTVALHIGLPSPSAAEIASVLSSACATDKEQQQGGGGGDCNNNGIQDSSSSFLSNSLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKSFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDND* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2630 362 Gene3D Classic Zinc Finger 203 226 - -
Pvu7g2630 362 SUPERFAMILY beta-beta-alpha zinc fingers 270 308 IPR036236 -
Pvu7g2630 362 MobiDBLite consensus disorder prediction 153 172 - -
Pvu7g2630 362 SMART c2h2final6 204 226 IPR013087 -
Pvu7g2630 362 SMART c2h2final6 288 308 IPR013087 -
Pvu7g2630 362 Gene3D Classic Zinc Finger 266 342 - -
Pvu7g2630 362 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 45 362 - -
Pvu7g2630 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 288 308 IPR013087 -
Pvu7g2630 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 231 IPR013087 -
Pvu7g2630 362 ProSitePatterns Zinc finger C2H2 type domain signature. 206 226 IPR013087 -
Pvu7g2630 362 PANTHER ZINC FINGER PROTEIN WIP2 45 362 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2630 Pvu-Chr7 49378555 49381137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2630 1 362 C2H2 Transcription Factor Family AT3G57670 61.619 9.68e-146 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g2630 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2630 - - vra:106771283 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2630 7 49378555 49381137 Pvu7g2630 7 49378555 49381137 ECH
Pvu7g2630 7 49378555 49381137 Pvu5g1533 5 37617397 37619615 ECH
Pvu1g1422 1 38316315 38318940 Pvu7g2630 7 49378555 49381137 PCT