Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2625 ATGGACGGTGGCGAAGATCCTTCAGCATTGGCTTGGGTTTGGGTCATTGAAGCTCTATCAGCCTGTAAAGCAATCTCGACTCCCATGTTGCAGGGTTTGATTGATTCAGCACCTGTCGGGATGGATAAATTTGGCGAAATTACAAAGGAGATAGTTTCTTTGAGGTGTTTGGAGGAACTGCCCAGTAGTGTGGTTGAACGTGTAGCTTCTTCTACATCGGATTCCAGAGCTAGATTTGACATTTCGCGGGGTTGTCAAGATGTCCTCCAGGAAATATTGAATGAGACCCCATTATCAAATCTGAAAATGACTGGAGCAGAGCTTTTGAAATCAGATGTTTACCCGTTTATAAATCACAAAAGAGCTGGCAATTTGAAATGTCACTTAGAGCAGCTGAGACAAACAATCTTGGAAGGTACTCATCCTCATACTGATTACTTGAAAGAAAGGAGTGGATTATTTCCTCGGAATAATGGTTATTCGGTGATTGTAAATGATGTCAAACGTGATGATCATTCAGCTAAGGAAGTTGGGAACTCCACCAATACTGAAAATATGGTAGGAAATGATATCTCAGTGTCCTTAACTTTAGAGAATGGGAATAAAACTTCCAAAGAACACTTGCTTGATAATAATTCTTCACCCTCCACGAGGAGTAGGGTTTACTCAGCTGATGATTATCTTACAGAACACTTTGATAGAAAGCAAGTCTGTCTAAATGAATGTGATGATTTCTGTAGAACTTCAAAGAGGGTTAAATTTTCTGCATCTACAAGTTTTGAGTCTAAGAAAGAGAAGCCAGTTTCTCAACTCAAACAGGAAGTGTCAGAACATTTAACTGAAAGAATTCTTCTAGTTTCTGAACGAGGAGATCATCATGTAGAAAATAATAACAAAGAAACTCTGGGTGGTGGGTCCTCAGAGGATATTCCCAATAAATGCACTGTTTCAAAATTGTGCCAACCTAGCAGCCATATTGAAGTTCCCCGTGATGAATCAAATACTCCTTTTAATGATGCTTTGATGCTTCAACCTACATTTGGTGCTGAAAATTCTAAGCAACTGCAGGTCGAGTCAATTCCACATGTTTCACTCGCAGATGGAATCCTGCTTGAGATTTCCGGAAGTAAACATAGGTCTAAACATGAAAAAGATTTACAACTCAAAGATCCAAATGACTCACAGCAGCAAATTGCTGGTGTTAAAGCTCCAGATCATACTGGGAATGGTTGTGGGGTAGAGAAATCAGGTGATATTGTGTATCAAGGTGAAAAAATTAGCCTTGAAATGGAAAAGCAGGCAGAACAAAATCTGTGTTTGAAGTGTAATGAAAGTGATCAATTACCAATTTCTGATGTAAATGTCATCCAATCAGTGGTTACTGAATGTTGTCTTGGTATGACAACTACCCTTCCAACAAATGATGCTAAGGCAGAAAAAAATCAGCAAATAATTAATCTACAGCAACCCAAACAGACAGAACCAGATATCGCAGCTTTAAATCTCTCCCAGGAGCCAGTTGTTTGTGATAAAACTATAGTTGGTGCAGTTATTGGTTGTGAAGCTGAGCAATCAAGTGATAGTGATGGATATCACAACGAAAAAAAATGTCTTGAAGCAAAAAAGCATGAATTCCTGCGCTCCCACTTCACAGTTGATCAAGATTTCTCAGCAATGAATGAACTAAATAAACAAAATCTTTGCATGAAGTGTAATCAAGGTGGCCAATTACTGGCTTGTAAAACAACTACTTGTCCATTGATGGTGCATGAAGACTGTCTAGGTTCATCTGTACAGTTGGATGCAGAGGGCAACTTTTTTTGCCCATTTTGTGCATATTCTCGCACTATTTCAGAATATGTTGAAGCTAAGGAAAAAGCTTCCTTGGCAAGGAAGGACTTAACCATCTTTATTAGTAAAGGTAAAATGAGTCAAGCTGCTGACAATCTTCTTTATGAATTTCGTACGCAAGAACATTGTTTTTCAAGAAAGAGTAGTGAGTGTGAACATATTCATGTAAAAAACAACAAAGATGATCAGTTGACAAGGTGTGAAGACAATAGAGAAGATCATGTTGGTGAGCATGCAAATGAAGCCAATAATCTTCAGTTTGGAAGAAGTGAGCAACAAAATTCATCATGCAGAGAAAAGGAAAATGTAAGCAATGGATCAGTTGAAATTTTAAGAGAAGAGAAAATTGGTGAAATGCGAAATGCAAAGAACATAACTGGTGTAAGAGTTGAAGAAAATGAAGTGCCAACTGACCATGTAGATGGACATGATGTTGACACATGTACTGGTGAAAAAACAAATAATGCCCTTGTTAATAAAAGCAATGCTGGATATGAAACTCCACAAGAAATGACAAAACAGCAAGCTATTGATGGAGCAACAGAGCCAGTTTGTGCACATAATACTGGAAAAGAGGAAATGTCTGAAATTGAATGTGATAAACATAGTACTTCTAGTTCTAGATACTCCATGAGATACCGTAAACATGAAATGCAATGCAAACCCCAGGCACGCCCAGTATTTCAGGGTAATCAATTAAGACGAAAAAAAATTCCGTGGACAGCTGAGGAGGAAGACATGTTAAGGGAGGGAGTACAGAAGTTTGGTTTCGATGACCCAAGGAAGTGGAAAAACATTTTGGCTTTTGGTTCTCATGTGTTTGAGAAAGTTGGTAAGCGTCGTACATCACAAGACCTGAAGGATAAATGGAAGAACATGTGCAAAGCTCACTCAAAATCAAAATGA 2757 0.3841 MDGGEDPSALAWVWVIEALSACKAISTPMLQGLIDSAPVGMDKFGEITKEIVSLRCLEELPSSVVERVASSTSDSRARFDISRGCQDVLQEILNETPLSNLKMTGAELLKSDVYPFINHKRAGNLKCHLEQLRQTILEGTHPHTDYLKERSGLFPRNNGYSVIVNDVKRDDHSAKEVGNSTNTENMVGNDISVSLTLENGNKTSKEHLLDNNSSPSTRSRVYSADDYLTEHFDRKQVCLNECDDFCRTSKRVKFSASTSFESKKEKPVSQLKQEVSEHLTERILLVSERGDHHVENNNKETLGGGSSEDIPNKCTVSKLCQPSSHIEVPRDESNTPFNDALMLQPTFGAENSKQLQVESIPHVSLADGILLEISGSKHRSKHEKDLQLKDPNDSQQQIAGVKAPDHTGNGCGVEKSGDIVYQGEKISLEMEKQAEQNLCLKCNESDQLPISDVNVIQSVVTECCLGMTTTLPTNDAKAEKNQQIINLQQPKQTEPDIAALNLSQEPVVCDKTIVGAVIGCEAEQSSDSDGYHNEKKCLEAKKHEFLRSHFTVDQDFSAMNELNKQNLCMKCNQGGQLLACKTTTCPLMVHEDCLGSSVQLDAEGNFFCPFCAYSRTISEYVEAKEKASLARKDLTIFISKGKMSQAADNLLYEFRTQEHCFSRKSSECEHIHVKNNKDDQLTRCEDNREDHVGEHANEANNLQFGRSEQQNSSCREKENVSNGSVEILREEKIGEMRNAKNITGVRVEENEVPTDHVDGHDVDTCTGEKTNNALVNKSNAGYETPQEMTKQQAIDGATEPVCAHNTGKEEMSEIECDKHSTSSSRYSMRYRKHEMQCKPQARPVFQGNQLRRKKIPWTAEEEDMLREGVQKFGFDDPRKWKNILAFGSHVFEKVGKRRTSQDLKDKWKNMCKAHSKSK* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2625 918 SUPERFAMILY FYVE/PHD zinc finger 561 615 IPR011011 -
Pvu7g2625 918 ProSitePatterns Zinc finger PHD-type signature. 568 611 IPR019786 -
Pvu7g2625 918 SUPERFAMILY Homeodomain-like 851 912 IPR009057 -
Pvu7g2625 918 Pfam Myb-like DNA-binding domain 857 913 - -
Pvu7g2625 918 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 560 622 IPR013083 -
Pvu7g2625 918 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 476 913 - -
Pvu7g2625 918 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 9 469 - -
Pvu7g2625 918 MobiDBLite consensus disorder prediction 695 720 - -
Pvu7g2625 918 ProSiteProfiles Zinc finger PHD-type profile. 565 614 IPR019787 -
Pvu7g2625 918 Gene3D - 847 914 - -
Pvu7g2625 918 MobiDBLite consensus disorder prediction 700 720 - -
Pvu7g2625 918 CDD SANT_TRF 855 912 - -
Pvu7g2625 918 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 851 915 IPR017930 -
Pvu7g2625 918 SMART PHD_3 567 612 IPR001965 -
Pvu7g2625 918 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 476 913 - -
Pvu7g2625 918 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 9 469 - -
Pvu7g2625 918 SMART sant 853 913 IPR001005 -
Pvu7g2625 918 ProSiteProfiles Myb-like domain profile. 849 911 IPR001005 -
Pvu7g2625 918 MobiDBLite consensus disorder prediction 377 409 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2625 847 913 Single Myb Histone (SMH) Gene Family AT1G17520 47.761 1.38e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu7g2625 Myb_DNA-bind_6 1.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2625 - - ccaj:109810464 1171.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2625 7 49313392 49320395 Pvu7g2625 7 49313392 49320395 ECH