Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2616 ATGATGAACCACTTGACCATTGAGACTGAGGATTCTTTTGCAAGCTTGCTTGAGCTTGCTGCTAACAACGATGTTGAAGGTTTTAAACGAATGATTGAGAGGGATCCTTCCTGTGTAGATGAGGTAGGACTATGGTACAGTCGCCAGAAGGGATCTAGGCGGATGGTCAATGAGCTCAGAACCCCGTTGATGGTTGCTGCTTCTTACGGGAGCATTGATATTTTGGATCTGATTCTCTCACTTTCTGGTTATGATATAAATAAACCCTGTGGCCTTGACAAGAGTACTGCTCTTCATTGTGCCGCTTCGGGCGGGGCTGAAAATGCTGTTGATGTTGTTATATTGCTCCTAGCTGCAGGAGCCGATCCAAACTCTGTGGATGGAAATGGTCATCGTCCAGTTGATGTCATTGTTTTTCCTCCCAAGCATGAATCTGTTAGAAACAGTCTTGAAGCACTTCTTCAAACTGATGACTCCATTGGAGTGTGTAATCTCAGGGTGATCACGGCCCCATCAAATGCATATTCTCCACCTTTGTCAACTTCACCCGAGAACGGGTCTCCTTCTGCACCAGATTTCCAACTGAAGTCAAAGTTAAACGATGGCTTTGTTTCTTCTGCATCAGAGAAGAAAGAGTATCCTGTTGATCCATCCCTTCCTGACATCAAGAATAGCATATATTCAACCGATGAATTCCGGATGTACTCTTTCAAAGTTCGACCTTGTTCACGTGCTTATTCACATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAGAATGCTCGCAGAAGGGACCCCAGAAAGTACCACTACAGCTGTGTCCCTTGTCCTGATTTTCGGAAGGGTGCTTGCCGACGTGGAGATATGTGTGAATATGCCCATGGAGTTTTCGAGTGTTGGCTGCATCCAGCACAGTATCGTACCCGTCTTTGCAAAGATGGGACAAGTTGCTCCAGAAGAGTTTGCTTTTTTGCTCACACTGCTGAGGAGCTTCGGCCATTATATGTTTCAACTGGTTCTGCTGTACCATCTCCTCGTTCAAGTTCATCTTCTGCTATGGAATTTGCTGCAGCTATGAATATGTTACCTGGCTCTCCTTCCTCAATGTCTGTCATGTCTCCTTCACCGTTCACTCCACCCATGTCACCCTCTGCCAATGGCATGTCACACTCATCTGTTGGCTGGCCCCAACCAAATGTCCCAGCCTTGCATCTTCCAGGGAGCAATCTTCATTCCAGTCGATTACGATCTTCATTCAATGCCAGAGATATTCCTATGGATGAGTTTGACATGTTGCCTGAGTACGATGCTCAGCAACAGCTTCTTAACGAGTTCTCTTGCCTCTCTAAACAGTCTAATGCTATGAACCGCTCCGGTCGCATTAAAACCCTGACCCCTTCAAATCTTGATGATCTATTTTCTTCTGAGAGTTCATCACCTCGGTTTGCTGATCCAGCATTGGCTTCGGCTGTTTTTTCTCCGACACATAAATCGGCTATTCTTAATCAATTTCAGCAGCAGCAAAGCCTGCTGTCGCCTGTGAACACAAATTTTTCTTCTAAAAATGTTGAGAATCCTTTATTGCAGGCTGCCTCATTTGGGGTTCAAGCATCAGGGAGGATGTCTCCTCGGAATGTGGAACCTATCTCTCCAATGAGCTCTCGGATTTCTGTGCTAGCTCAACGTGAGAAGCAGCAACAATTCCGAAGCCTTAGCTCCAGGGAACTTGGCTCCAACTCTGCTACTGTTGCTGCAGCTGCTGCTGGGTCCCCAGTCAATTCTTGGTCAAAATGGGGACCCTCCAATGGTACATTGGATTGGGCTGTCAATGCTGATGAGTTAAGGAAACATCGTAGATCATCCTCGTTTGAGCACGGGAATAATAGTGAGGAGCCTGATTTCTCATGGGTCCAGTCACTTGTTAAAGAATCTCCAACTGAGATTAAGGAGAATTCAACTACAACTGTCTCGAGTGGTGCAGCAGCTGGATCCTCCAGTGAGGTATCAAATATGAGCACACAAATGGATTCTGTTGATCATGCGGTGTTAGGAGCATGGCTTGAACAAATGCAGCTCGATCTTGTGGCTCAGCAAAATTAA 2103 0.4603 MMNHLTIETEDSFASLLELAANNDVEGFKRMIERDPSCVDEVGLWYSRQKGSRRMVNELRTPLMVAASYGSIDILDLILSLSGYDINKPCGLDKSTALHCAASGGAENAVDVVILLLAAGADPNSVDGNGHRPVDVIVFPPKHESVRNSLEALLQTDDSIGVCNLRVITAPSNAYSPPLSTSPENGSPSAPDFQLKSKLNDGFVSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSSSSAMEFAAAMNMLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVGWPQPNVPALHLPGSNLHSSRLRSSFNARDIPMDEFDMLPEYDAQQQLLNEFSCLSKQSNAMNRSGRIKTLTPSNLDDLFSSESSSPRFADPALASAVFSPTHKSAILNQFQQQQSLLSPVNTNFSSKNVENPLLQAASFGVQASGRMSPRNVEPISPMSSRISVLAQREKQQQFRSLSSRELGSNSATVAAAAAGSPVNSWSKWGPSNGTLDWAVNADELRKHRRSSSFEHGNNSEEPDFSWVQSLVKESPTEIKENSTTTVSSGAAAGSSSEVSNMSTQMDSVDHAVLGAWLEQMQLDLVAQQN* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2616 700 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Pvu7g2616 700 SUPERFAMILY Ankyrin repeat 16 139 IPR036770 -
Pvu7g2616 700 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 2 696 - -
Pvu7g2616 700 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Pvu7g2616 700 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Pvu7g2616 700 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Pvu7g2616 700 Gene3D - 9 159 IPR036770 -
Pvu7g2616 700 Pfam Ankyrin repeats (3 copies) 50 127 IPR002110 GO:0005515
Pvu7g2616 700 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Pvu7g2616 700 PANTHER UNKEMPT FAMILY MEMBER 2 696 IPR045234 -
Pvu7g2616 700 Gene3D - 273 334 - -
Pvu7g2616 700 SMART ANK_2a 93 125 IPR002110 GO:0005515
Pvu7g2616 700 SMART ANK_2a 58 88 IPR002110 GO:0005515
Pvu7g2616 700 SMART ANK_2a 11 40 IPR002110 GO:0005515
Pvu7g2616 700 MobiDBLite consensus disorder prediction 646 674 - -
Pvu7g2616 700 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2616 Pvu-Chr7 49254016 49258115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2616 8 694 C2H2 Transcription Factor Family AT5G12850 54.131 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu7g2616 Ank_2 5.5e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2616 - - gmx:100813554 1212.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2616 7 49254016 49258115 Pvu7g2616 7 49254016 49258115 ECH