Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2604 ATGGGAACTCCCGAATTCCCAGATCTGGGAAAGCACTGTTCGGTCTCTGATTGCAAGTTGATCGATTTCTTGCCCTTTACCTGCGATCGCTGCAACCAGGTGTACTGTTTGGAGCACAGAGGTTATATTAAACATCAGTGTCCAAAAGCTGACAAGAAAGATGTTACTGTAGTTATATGTCCACTTTGCGCTAAAGGAGTTCGCCTAGTTCCTGATCAAGATCCAAATATAACTTGGGAGAATCATGTCAATACTGACTGTGACCCATCGAACTATGAGAAAGTCACAAAGAAGAAAAAATGTCCTGTCCCAGGATGCAGAGAGATATTAGGATTCTCAAACACAATTAAGTGCAGGGACTGCACGGTAGACCATTGTTTAAAGCATCGGTTCGGACCTGATCATAGATGTCCTGGTCCCAGAAAAATGGAAACAAGCTTTTCATTTAGGAATATTTTGAATGTGAATAAAAAACAGGAGTCCAAACCCCAGTCAAGTTCGTCTGCATCATCAAGATGGTCTACAAACTTTCTTAATGCAGTTTCTAACATTCGAGCATCAGCAGAGGCTGGTGTGTCGAAGTTGAGTGAAGTTAACCAAGGCTGGTGGACAGCATCAAGTGGGGTGGGATCGAGCCATAGCAGTGGTCAAGTGGAGCAATGCCCTCAGTGTGATACCAAGTTTTCCTCTGTTACCGCTTTGGTTGACCATGTGCAAAAAGTTCATGAAAGGAATGGCAAGCGATCTGGAGCAAAGGTTACAATTGATGTTTGCCCAAAGTGTAGTAGAGGATTCCGGGATCCTGTTTCCCTTGTGGAACATGTTGAGAGGGATCATGGTGGCAGTTCTAGATCATAA 858 0.4382 MGTPEFPDLGKHCSVSDCKLIDFLPFTCDRCNQVYCLEHRGYIKHQCPKADKKDVTVVICPLCAKGVRLVPDQDPNITWENHVNTDCDPSNYEKVTKKKKCPVPGCREILGFSNTIKCRDCTVDHCLKHRFGPDHRCPGPRKMETSFSFRNILNVNKKQESKPQSSSSASSRWSTNFLNAVSNIRASAEAGVSKLSEVNQGWWTASSGVGSSHSSGQVEQCPQCDTKFSSVTALVDHVQKVHERNGKRSGAKVTIDVCPKCSRGFRDPVSLVEHVERDHGGSSRS* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2604 285 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 284 - -
Pvu7g2604 285 SUPERFAMILY AN1-like Zinc finger 93 146 IPR035896 -
Pvu7g2604 285 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Pvu7g2604 285 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Pvu7g2604 285 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Pvu7g2604 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 247 IPR013087 -
Pvu7g2604 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 284 IPR013087 -
Pvu7g2604 285 ProSitePatterns Zinc finger C2H2 type domain signature. 221 242 IPR013087 -
Pvu7g2604 285 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 284 - -
Pvu7g2604 285 Pfam Zinc finger, C2H2 type 257 279 IPR013087 -
Pvu7g2604 285 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Pvu7g2604 285 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Pvu7g2604 285 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270
Pvu7g2604 285 ProSitePatterns Zinc finger C2H2 type domain signature. 258 279 IPR013087 -
Pvu7g2604 285 Gene3D Classic Zinc Finger 197 282 - -
Pvu7g2604 285 Gene3D - 2 60 IPR035896 -
Pvu7g2604 285 Gene3D - 80 152 IPR035896 -
Pvu7g2604 285 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Pvu7g2604 285 Pfam C2H2-type zinc finger 220 242 - -
Pvu7g2604 285 SMART c2h2final6 219 242 IPR013087 -
Pvu7g2604 285 SMART c2h2final6 256 279 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2604 Pvu-Chr7 49148213 49151520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2604 1 285 C2H2 Transcription Factor Family AT2G41835 63.542 7.57e-127 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g2604 zf-AN1 6.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2604 - - gmx:100786272 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2604 7 49148213 49151520 Pvu7g2604 7 49148213 49151520 ECH
Pvu1g1404 1 37969769 37971616 Pvu7g2604 7 49148213 49151520 PCT