Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2554 ATGTCCCTCGAAGACTCTCTGAGATCTCTCTCCCTCGACTACCTCAACCTTCTCATCAATGGCCAGGCCTTCAGCGACGTCACTTTCCAGGTCGAGGGCCGTCTCGTCCACGCGCACCGCTGCATCTTGGCCGCGCGTAGCCTCTTCTTCCGGAAATTCTTCTGCGGCCCCGACTCTCCGCCCGGCCTCGACCCCGCCGCCGCCTCGCGAGCCGCGGCTGCCTCCGGAGCGCGCCCTCCCGGCGTGATCCCCGTGAACTCCGTCGGCTACGAGGTTTTCTTGCTGCTGCTGCAGTTCCTGTACAGCGGACAAGTCTCCATCGTGCCGCAGAAGCACGAGGCCAGACCCAATTGCGGCGAGCGAGGGTGCTGGCACACGCATTGCACCTCCGCCGTTGATCTCGCCCTCGACACCCTCGCCGCCGCCAGATACTTCGGCGTTGAACAACTTGCATTGCTCACTCAGAAACAACTTGCGAGCATGGTGGAGAAAGCCTCAATCGACGATGTGATGAAAGTGTTGATAGCATCTCGAAAGCAGGAAATGCAGCAGCTGTGGAGCACGTGCTCCCACCTGGTGGCCAAGTCAGGTCTTCCGCCGGAGGTGCTGGCCAAGCACCTCCCCATCGACGTCGTGGCCAAGATCGAGGAGCTCCGCCTCAAATCCTCCCTCGCGCGCCGCTCCATGCTGCCGCTCCGACACCCGCACCAGCACCCCGACCTGGGAGCCGCCGACATGGAGGACCAGAAAATCCGGCGGATGAGGCGCGCGCTCGACTCCTCCGACGTGGAGCTCGTGAAGCTCATGGTCATGGGGGAGGGCCTAAACCTGGACGAGGCGCTGGCGTTGCACTACGCCGTGGAGAGTTGCAGCAGGGAGGTGGTGAAGGCGCTGCTGGAGCTGGGCGCGGCGGACGTCAACTTCCCGGCCGGTCCGGCCGGGAAGACTCCTCTGCACGTGGCGGCGGAGATGGTGTCCCCGGAGATGGTGGCGGTGTTGCTGGACCACCACGCTGACCCGAATGTGCGAACGGTGGACGGCGTGACCCCGTTGGACATCCTCAGAACCCTAACCTCTGACTTCCTCTTCAAAGGGGCAGTTCCTGGTCTCACCCACATTGAGCCCAACAAGCTCAGGCTCTGCTTGGAGCTGGTGCAATCTGCAGCCCTCGTCTTGTCTCGTGAAGAAGGAAACAACAACAACCATGCTAACAACACCAACGACAACACTAACAACAGCAACACTTCTTCTGCTATCTATCCACCAATGAGCGAAGAGCACAGCAGCAGCAATTTGGACTCCAGACTGGTGTATCTCAACCTCGGCGCCACGCCGCAAATAGGTGACGATGATAACAACCAGAGGGAAGCCATGAACCGTCATGGCTCGCATGGCGGTGGATGTGACCCTTCAATGTACCATCACTCTCATGACTTCTAG 1440 0.6083 MSLEDSLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDSPPGLDPAAASRAAAASGARPPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIDDVMKVLIASRKQEMQQLWSTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSMLPLRHPHQHPDLGAADMEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVESCSREVVKALLELGAADVNFPAGPAGKTPLHVAAEMVSPEMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNNNNHANNTNDNTNNSNTSSAIYPPMSEEHSSSNLDSRLVYLNLGATPQIGDDDNNQREAMNRHGSHGGGCDPSMYHHSHDF* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2554 479 ProSiteProfiles Ankyrin repeat region circular profile. 313 343 - -
Pvu7g2554 479 ProSiteProfiles Ankyrin repeat profile. 313 345 IPR002110 GO:0005515
Pvu7g2554 479 ProSiteProfiles BTB domain profile. 25 109 IPR000210 GO:0005515
Pvu7g2554 479 PANTHER REGULATORY PROTEIN NPR5 1 479 - -
Pvu7g2554 479 MobiDBLite consensus disorder prediction 443 479 - -
Pvu7g2554 479 SUPERFAMILY Ankyrin repeat 272 356 IPR036770 -
Pvu7g2554 479 MobiDBLite consensus disorder prediction 396 431 - -
Pvu7g2554 479 SUPERFAMILY POZ domain 8 160 IPR011333 -
Pvu7g2554 479 Gene3D - 245 361 IPR036770 -
Pvu7g2554 479 SMART ANK_2a 278 308 IPR002110 GO:0005515
Pvu7g2554 479 SMART ANK_2a 313 342 IPR002110 GO:0005515
Pvu7g2554 479 SMART BTB_4 25 162 IPR000210 GO:0005515
Pvu7g2554 479 Pfam BTB/POZ domain 16 111 IPR000210 GO:0005515
Pvu7g2554 479 Pfam Ankyrin repeats (3 copies) 261 343 IPR002110 GO:0005515
Pvu7g2554 479 Gene3D Potassium Channel Kv1.1; Chain A 4 195 IPR011333 -
Pvu7g2554 479 CDD BTB_POZ_NPR_plant 8 162 - -
Pvu7g2554 479 Pfam Domain of unknown function (DUF3420) 197 255 IPR024228 -
Pvu7g2554 479 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 479 IPR044284 GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2554 Pvu-Chr7 48740800 48745098 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pvu7g2554 BTB 5.4e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2554 K14508 - gmx:100811388 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2554 7 48740800 48745098 Pvu7g2554 7 48740800 48745098 ECH
Pvu1g1289 1 34956932 34960420 Pvu7g2554 7 48740800 48745098 PCT