Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2523 ATGTCTGATGAATTCTTTGGTAGGGTTGATGAGAGTAGAAAACTGAAACGCAAGATCGAAGAGGCATCTTCTGCAGAAATTGTGGATTCAGAGTTGTTACTATCCATGAGTCTTGGCAACAACAACATGGTTGGAGAGTCTTCTTCCATCTGCAAAACTCTGAAAAACCCCATGGATTCACCAAAAGCAGTGGAAAACCCTAATCATCAGATGATTATGCCTAAGCAGAGGCAATTCCCATGCAAGTTTTGCAGCAAAAAGTTTCCAAGTTCTCAAGCCCTAGGAGGGCATCAAAATGCTCATAGACGTGAAAGAGTTCTGTCAAGAATAGACAGAGAAATTGACATGGGAACTTTTGGAGTTGGTGTTCACATGTACCCTTACTCCACCATGGCTCATCAACACCCTCTTCGTGGTTCTCCACTACCCTTTTACTATGAGCCTAACATGCACCCTTTGGCTCAGATGTCAACCATGCCATGGCCTCTTGCACCACTTCACAACACCTCCATTTCAGGGCAACGATTTGGGATGGGCACCACCACCAACCTTGGAGGCATTGAAACTCCACAATACCATAGGGGTTTAGGGTTTGGTTTTGATCATAACCAAGTTCATCATGCGTTTGATCCCACCAATGGAGCTTCCATGCCTCGTCCAACTCTTGGTGGCCTTATGAGAAACCAGTATAGTGGGAACCAACCATTTTGA 711 0.4487 MSDEFFGRVDESRKLKRKIEEASSAEIVDSELLLSMSLGNNNMVGESSSICKTLKNPMDSPKAVENPNHQMIMPKQRQFPCKFCSKKFPSSQALGGHQNAHRRERVLSRIDREIDMGTFGVGVHMYPYSTMAHQHPLRGSPLPFYYEPNMHPLAQMSTMPWPLAPLHNTSISGQRFGMGTTTNLGGIETPQYHRGLGFGFDHNQVHHAFDPTNGASMPRPTLGGLMRNQYSGNQPF* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2523 236 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Pvu7g2523 236 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 234 - -
Pvu7g2523 236 Gene3D Classic Zinc Finger 61 115 - -
Pvu7g2523 236 SUPERFAMILY beta-beta-alpha zinc fingers 76 106 IPR036236 -
Pvu7g2523 236 Pfam C2H2-type zinc finger 79 104 - -
Pvu7g2523 236 PANTHER ZINC FINGER PROTEIN JAGGED 1 234 IPR045320 GO:0003700
Pvu7g2523 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2523 Pvu-Chr7 48472183 48472893 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2523 75 177 C2H2 Transcription Factor Family AT5G01860 36.538 2.09e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g2523 zf-C2H2_6 7.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2523 - - gmx:102663144 253.062