Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2519 ATGGCACAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAGAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCTGTTGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATAGCGCGGACAAATGAGAAACATTCAGAGACCGCCGCAGCATATTTGGAGGCACAACAGAATAAAGTGAAAGAACAACAGCAACTGCAAATGCAGCAGTTGCAATTAATTCGTCAAGCTCAACTTCAAAGAAGGGATTCTAATCATCCTCCCCTTGGAGGCCCTGTAAATACTATTACTACAGAAGGAGTGCTTGGGCAATCTACTGCAAGCGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCTACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACTGCAGCTTTGCAGCAAATCCAGGCTCGAACTCAGCAAACCCCTCAGGATATCAAAGGTGAAGTCAACATGGGTGCCATGCAGAGATCCTTGCCTATGGACCCTTCATCAATTTACGGGCAGGGAGGAATGCAGTCAAAGCCTGGCATTGCAAATGCAGGATTAAATGCTGGAGTAGGTAGTCTCACATTGAAAGGATGGCCATTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTACCTCAACAGCAACAACAGCTCCTTGCTCAGGTACAGGCACAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATTGATCCACAACGATTAAGGGGATTAACTAGGGGAAGTTTGAATCCTAAAGATGGTCAATCAATTGCAAATGATGGATCTATAGGCTCTCCAATGCAATCTACTTCATCAAAGATCAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAACAATTGATGCAGAATAACCGGAAAAGGAAGGGGCCTACATCTTCAGGACCTGCAAACAGTACTGGAACAGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCGACTCATACACCTGGTGACGGAGTTGCAATGGCAGGTAGCTTGCAAAATGTTGCAGGTGTATCCAAAGGATTGATGATGTATGGTACTGATGGAGCGGGTGGTCTTGCATCTTCCACAAATCAACTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGGACGTTGAAACGGAACCCTTCGGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAGTGAAGTTAGTTCTATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTGGCTAGTGCTGGCCATGACAAAAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACGGAGAGTACTCCGGAGGAACACAATCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACTGTTCGGTTGTGGGATGCTGCAGATCCAACCTTTTGTTTACAGGCATATAGTGGTCATACTTCGCATGTGGTGTCCCTTGATTTTCACCCAAAAAAAAATGATCTTTTCTGTTCCTGTGATGATAACAACGAGATTCGTTTCTGGAATATTAGCCAATATTCTTGCACCCGACTTTTTAAGGGAGGATCTACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCAATTTCTGGCTGCAGCAAGTGGTAGTGTTGTGTCTCTCTTTGATGTTGAGACTGATAGGCAGATGCACACATTTCAGGGACACTCTGCAGAGGTACATTGCGTCTGTTGGGATACAAATGGAGATTACTTGGCATCTGTTAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCATCTGGGGAGTGCATTCATGAACTTAATTCCAGTGGAAACATGTATCATTCTTGTGTTTTTCACCCAAGCTACTCAACTCTGTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACATGGTTGAGAATAGATGTATGACAATTTCAGCTCATGAGTGTGTGATATCTGCATTAGCACAATCACCCGTAACAGGGATGGTTGCTTCTGCCAGTCATGACAAATCTGTAAAGATTTGGAAATAA 2358 0.4338 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQNKVKEQQQLQMQQLQLIRQAQLQRRDSNHPPLGGPVNTITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPQDIKGEVNMGAMQRSLPMDPSSIYGQGGMQSKPGIANAGLNAGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQQQQQLLAQVQAQGNIGNSPVYGDIDPQRLRGLTRGSLNPKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLMQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGSLQNVAGVSKGLMMYGTDGAGGLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHNLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFCLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRFWNISQYSCTRLFKGGSTQVRFQPRVGQFLAAASGSVVSLFDVETDRQMHTFQGHSAEVHCVCWDTNGDYLASVSQESVKVWSLASGECIHELNSSGNMYHSCVFHPSYSTLLVIGGYQSLELWNMVENRCMTISAHECVISALAQSPVTGMVASASHDKSVKIWK* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2519 785 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 589 624 - -
Pvu7g2519 785 MobiDBLite consensus disorder prediction 320 407 - -
Pvu7g2519 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 671 711 IPR001680 GO:0005515
Pvu7g2519 785 MobiDBLite consensus disorder prediction 300 413 - -
Pvu7g2519 785 Pfam LisH 10 36 IPR006594 GO:0005515
Pvu7g2519 785 SMART WD40_4 582 622 IPR001680 GO:0005515
Pvu7g2519 785 SMART WD40_4 539 578 IPR001680 GO:0005515
Pvu7g2519 785 SMART WD40_4 746 785 IPR001680 GO:0005515
Pvu7g2519 785 SMART WD40_4 705 744 IPR001680 GO:0005515
Pvu7g2519 785 SMART WD40_4 664 702 IPR001680 GO:0005515
Pvu7g2519 785 SMART WD40_4 625 661 IPR001680 GO:0005515
Pvu7g2519 785 SMART WD40_4 497 536 IPR001680 GO:0005515
Pvu7g2519 785 SMART Lish 8 40 IPR006594 GO:0005515
Pvu7g2519 785 CDD WD40 500 785 - -
Pvu7g2519 785 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 546 578 - -
Pvu7g2519 785 Coils Coil 78 98 - -
Pvu7g2519 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 546 578 IPR001680 GO:0005515
Pvu7g2519 785 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 753 785 - -
Pvu7g2519 785 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 785 IPR044716 GO:0003714
Pvu7g2519 785 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Pvu7g2519 785 Pfam WD domain, G-beta repeat 545 578 IPR001680 GO:0005515
Pvu7g2519 785 Pfam WD domain, G-beta repeat 752 785 IPR001680 GO:0005515
Pvu7g2519 785 Pfam WD domain, G-beta repeat 585 622 IPR001680 GO:0005515
Pvu7g2519 785 Pfam WD domain, G-beta repeat 667 702 IPR001680 GO:0005515
Pvu7g2519 785 Pfam WD domain, G-beta repeat 509 536 IPR001680 GO:0005515
Pvu7g2519 785 Gene3D - 465 631 IPR015943 GO:0005515
Pvu7g2519 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 504 545 IPR001680 GO:0005515
Pvu7g2519 785 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 504 539 - -
Pvu7g2519 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 589 631 IPR001680 GO:0005515
Pvu7g2519 785 ProSitePatterns Trp-Asp (WD) repeats signature. 523 537 IPR019775 -
Pvu7g2519 785 PRINTS G protein beta WD-40 repeat signature 523 537 IPR020472 -
Pvu7g2519 785 PRINTS G protein beta WD-40 repeat signature 565 579 IPR020472 -
Pvu7g2519 785 PRINTS G protein beta WD-40 repeat signature 772 785 IPR020472 -
Pvu7g2519 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 753 785 IPR001680 GO:0005515
Pvu7g2519 785 Gene3D - 632 785 IPR015943 GO:0005515
Pvu7g2519 785 SUPERFAMILY WD40 repeat-like 498 785 IPR036322 GO:0005515
Pvu7g2519 785 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 1 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2519 Pvu-Chr7 48422403 48435427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2519 498 747 U-box Gene Family AT2G33340 27.715 1.28e-17 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pvu7g2519 WD40 0.00041 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2519 - - var:108326218 1459.89