Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2516 ATGTCAAATGAAGTGTTTGTTGGTGGTGGTGTTGAGAGTAGAAAGTTGAAGCGTAAGATTGAGGAACTTTCATCTGATGTTGATTTAGAGTTTTCATTATCTTTGAGTCTTGGCAATACAAAAATGGTGGCTAAATCATCATCATCTACTTTCTTTGGTAAATCATTGAAGAACCATAAGAAGACACCAAATTCTGCTTCAAATCCCTCAGAAAACAGCAATCATGAAGTGACTGTGCCTAAGCAATTCCAATTCTCTTGCATGTTTTGCAATAAGAAATTTTCAAGCCCTCAAGCTCTTGGAGGACACCAAAATGCTCATAGGCCTGAAAGAGTGGTCTTAAGGATGGAGAAAGATATGAGAACTTTTGGACATGGCAATCACATGTTCCCACACTCATCCATTCCGCATCACTATCCCTTTCATGGCTCAATCCCCCTTTATTCTAGGCATAACATGCACCCCACCATGGCTCATTTCTCAACCATGCCATGGCCTCATTTTGTACCTACCTTTGGCAACCAAGAGTTTCATGACAGATGCATCAGAAGACAGCAATTTGGGATGAACAACCCTTGGGGAATAGTATCCCAAACTCCAAAAAATTTGTATAGCAGGGATGTGGAATTTGGTTTTAAGCATAACTAA 648 0.3997 MSNEVFVGGGVESRKLKRKIEELSSDVDLEFSLSLSLGNTKMVAKSSSSTFFGKSLKNHKKTPNSASNPSENSNHEVTVPKQFQFSCMFCNKKFSSPQALGGHQNAHRPERVVLRMEKDMRTFGHGNHMFPHSSIPHHYPFHGSIPLYSRHNMHPTMAHFSTMPWPHFVPTFGNQEFHDRCIRRQQFGMNNPWGIVSQTPKNLYSRDVEFGFKHN* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2516 215 SUPERFAMILY beta-beta-alpha zinc fingers 84 112 IPR036236 -
Pvu7g2516 215 MobiDBLite consensus disorder prediction 53 76 - -
Pvu7g2516 215 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Pvu7g2516 215 Gene3D Classic Zinc Finger 60 125 - -
Pvu7g2516 215 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 215 - -
Pvu7g2516 215 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Pvu7g2516 215 PANTHER ZINC FINGER PROTEIN JAGGED 1 215 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2516 Pvu-Chr7 48402156 48402803 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2516 42 169 C2H2 Transcription Factor Family AT1G67030 28.906 2.12e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g2516 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2516 - - gmx:102663144 258.84