Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2511 ATGTCAAATAGTAGGAACACACATTGGTGTTATAGTTGCAGGAGGCCGGTTCGGCTGGGGCGGCGAGATGCGGTTTGTCCTAGCTGTAATGAGGGATTTGTTCATGAACTTAATGATATGGTGCATGTTAATCCTTTTGACTTGTTTGGAATGGACAACAACGAAGAAAGAGACCAAAGGGTCGGACTCATGGAAACCTTCTCTGCCTTCATGAGGCATCAAATGGCAGACAGAGGCAGAAGTCGTGACATCAGGGCACAAACAGATTCAAATCCTGAACACAGTGCAGGGTTTGCTCCTCTGTTGATCTTTGGTGGCCAAATACCTTTCAGATTGTCCGGCCACGGCGGCTTCGAGGCTCTCTTCAACGGGGCTCCCGGAATCGGCATGACACGAGGCAACACAGGCGACTATTTTGTTGGTCCTGGACTTGAAGAACTGTTTGAACAGCTTTCAGCTAGTAACAGGCAAGGTCCAGCACCAGCATCAAGATCCTCAATCGATGCCATGCCTACCATCAAGATCACGCAGAGGCATCTTCGATCAGATTCTCATTGTCCAGTTTGCAAGGATAAATTTGAGCTGGGGTCTGAAGCAAGACAAATGCCATGCCACCATTTGTATCACTCAGATTGCATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCCGTTTGTCGCCAAGAACTGCCACCACAAGGATTGAGCAGTAATCGAGGCACAAATGGTAGAAGTAGAAGTGGAAGTGGAAGGGTAAGCAGTAGTGGTAGGGAGAGCCAGGGAAGGAGAAATCCATTTTCCTTTTTGTGGCCTTTTCGTTCTTCTCATTCCAGCAGTAATGATGAAGCAACCGGAAGCAGCACACCAGCACCAAGTATCCCAGAGAATAGCCATCATGCAGGGTACTCTGGGTGGCCATTTGAATGA 927 0.4844 MSNSRNTHWCYSCRRPVRLGRRDAVCPSCNEGFVHELNDMVHVNPFDLFGMDNNEERDQRVGLMETFSAFMRHQMADRGRSRDIRAQTDSNPEHSAGFAPLLIFGGQIPFRLSGHGGFEALFNGAPGIGMTRGNTGDYFVGPGLEELFEQLSASNRQGPAPASRSSIDAMPTIKITQRHLRSDSHCPVCKDKFELGSEARQMPCHHLYHSDCIVPWLVQHNSCPVCRQELPPQGLSSNRGTNGRSRSGSGRVSSSGRESQGRRNPFSFLWPFRSSHSSSNDEATGSSTPAPSIPENSHHAGYSGWPFE* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2511 308 MobiDBLite consensus disorder prediction 270 294 - -
Pvu7g2511 308 SMART ring_2 186 226 IPR001841 -
Pvu7g2511 308 MobiDBLite consensus disorder prediction 231 262 - -
Pvu7g2511 308 SUPERFAMILY RING/U-box 166 233 - -
Pvu7g2511 308 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Pvu7g2511 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 287 - -
Pvu7g2511 308 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Pvu7g2511 308 MobiDBLite consensus disorder prediction 230 308 - -
Pvu7g2511 308 Pfam Ring finger domain 185 227 IPR001841 -
Pvu7g2511 308 CDD RING-H2_RNF126_like 186 227 - -
Pvu7g2511 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 3 287 - -
Pvu7g2511 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2511 Pvu-Chr7 48348580 48352145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2511 121 231 C3H Transcription Factor Family AT5G01980 43.478 2.18e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2511 K11982 - gmx:100787523 580.096