Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2501 ATGGAGAACTCTGATGACCTCTTTCACTTCCTCTCAAACACCAATGATTCTTTCTTTCCTGAACCTGCATCATCAATCATGCAACAAAGCTTCTCTTCTTCCTTTTCTTATTACCCTCTTCAACCATTTAATGCACCACCCCATCAAGATAAAGCCCTTGCTGCTCTGAGGAACCACAAAGAGGCTGAGAAGAGAAGAAGGGAAAGAATCAATGCCCACCTCAACAAGCTTCGCACTCTTCTTCCTTGTAACTCCAAGACCGACAAGGCTTCGCTCTTGGCTAAGGTGGTGGAAAGGTTGAAGGAGTTGAAGCAGCAGATGTCTGAAATAACCCAATCCGAAACGTTTCCTTCGGAGAACGACGAGATCTCCGTTCTGTCCACCGGCGGTGACGGGAGTGGCGGTGACGGACGACTCATATTCAAGGCCTCGTTGTGCTGTGAGGACCGCTCCGACCTCATCCCTGACCTCGTCGGAATTCTCAAGTCTCTTCACCTCACAACGCTCAGAGCCGAAATCGCAACGCTCGGAGGAAGAACCCGCAACGTTCTGGTGGTGGCCACCGACAAAGATCGCAGCGTTGAATCAATCCACTTCCTGCAAAACTCGTTGCACACTCTGCTACAACACAACGGCGCATCCAAACGACGCCGTGTCGTAGGACCAAACTTCATCGTTTAA 681 0.5007 MENSDDLFHFLSNTNDSFFPEPASSIMQQSFSSSFSYYPLQPFNAPPHQDKALAALRNHKEAEKRRRERINAHLNKLRTLLPCNSKTDKASLLAKVVERLKELKQQMSEITQSETFPSENDEISVLSTGGDGSGGDGRLIFKASLCCEDRSDLIPDLVGILKSLHLTTLRAEIATLGGRTRNVLVVATDKDRSVESIHFLQNSLHTLLQHNGASKRRRVVGPNFIV* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2501 226 Coils Coil 53 73 - -
Pvu7g2501 226 CDD bHLH_AtAIG1_like 49 125 - -
Pvu7g2501 226 PANTHER TRANSCRIPTION FACTOR BHLH30 7 222 IPR045847 GO:0003700|GO:0006355
Pvu7g2501 226 Coils Coil 93 113 - -
Pvu7g2501 226 SMART finulus 60 109 IPR011598 GO:0046983
Pvu7g2501 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 116 IPR036638 GO:0046983
Pvu7g2501 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 103 IPR011598 GO:0046983
Pvu7g2501 226 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 7 222 - -
Pvu7g2501 226 CDD ACT_UUR-ACR-like 144 208 - -
Pvu7g2501 226 Gene3D - 49 115 IPR036638 GO:0046983
Pvu7g2501 226 Pfam Helix-loop-helix DNA-binding domain 58 103 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2501 Pvu-Chr7 48237680 48239078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2501 37 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 64.481 1.36e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu7g2501 HLH 4.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2501 - K22484 pvu:PHAVU_007G243000g 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2501 7 48237680 48239078 Pvu7g2501 7 48237680 48239078 ECH
Pvu1g1260 1 34204192 34206220 Pvu7g2501 7 48237680 48239078 PCT