Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2489 ATGACAACAGCAGAAGAAACTTCAAACTTGGATCTCATAAGCCAACATCTCTTAGGTGAAAACATCTCAAACTCCTTTTTCTCCAACCTCAATCCTGTCAAGCTTGAAGCCCCCTCATCACCAGAGTTTGATTTCAGCTCATATATTTCAGAAAACACCAGTTTCTTCACTTTCCTTGAAGGCTATGACTTGGTGGCAGACATGGAGTTTGTTGATCACAAGGCCATGAATTCCACATCAACACCAACCATCCCCATCTCCTCCAAGGAACCAAAGAAATGCAATTCTCCTGAACCAATGGTGTCATCAGAGGAGAAGGCAAAGAAGGCAGAATATGATGAGGCAAAGCGTTATAGGGGAGTTAGAAGAAGGCCTTGGGGTAAGTTTGCTGCTGAAATCCGTGACCCTTCAAGGAAAGGGACAAGGGTTTGGCTTGGGACTTTTGACACTGAAATTGATGCTGCTAAGGCCTATGATTGTGCTGCTTTCAAGATGAGGGGTCAGAAGGCCATTCTGAACTTTCCTCTTGAGGCTGGAGAGTCTGATCCAAAGCCAAACAGTTGTGGCAGGAAAAGAAGAAGAGAGAGCCTTGAATTGGAGCTGCCACAGGTCCAAGTTCATCATGGTGTATCATGA 636 0.4497 MTTAEETSNLDLISQHLLGENISNSFFSNLNPVKLEAPSSPEFDFSSYISENTSFFTFLEGYDLVADMEFVDHKAMNSTSTPTIPISSKEPKKCNSPEPMVSSEEKAKKAEYDEAKRYRGVRRRPWGKFAAEIRDPSRKGTRVWLGTFDTEIDAAKAYDCAAFKMRGQKAILNFPLEAGESDPKPNSCGRKRRRESLELELPQVQVHHGVS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2489 211 MobiDBLite consensus disorder prediction 175 211 - -
Pvu7g2489 211 SMART rav1_2 117 181 IPR001471 GO:0003700|GO:0006355
Pvu7g2489 211 MobiDBLite consensus disorder prediction 79 108 - -
Pvu7g2489 211 CDD AP2 116 175 IPR001471 GO:0003700|GO:0006355
Pvu7g2489 211 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Pvu7g2489 211 PRINTS Ethylene responsive element binding protein signature 157 177 IPR001471 GO:0003700|GO:0006355
Pvu7g2489 211 Pfam AP2 domain 117 167 IPR001471 GO:0003700|GO:0006355
Pvu7g2489 211 Gene3D AP2/ERF domain 116 177 IPR036955 GO:0003700|GO:0006355
Pvu7g2489 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 197 - -
Pvu7g2489 211 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 197 - -
Pvu7g2489 211 SUPERFAMILY DNA-binding domain 117 176 IPR016177 GO:0003677
Pvu7g2489 211 MobiDBLite consensus disorder prediction 184 201 - -
Pvu7g2489 211 ProSiteProfiles AP2/ERF domain profile. 117 175 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2489 Pvu-Chr7 48154568 48155203 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2489 1 205 AP2-EREBP Transcription Factor Family AT5G07580 40.000 1.50e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu7g2489 AP2 5.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2489 - - ccaj:109813158 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2489 7 48154568 48155203 Pvu7g2489 7 48154568 48155203 ECH
Pvu1g1610 1 41268985 41272439 Pvu7g2489 7 48154568 48155203 PCT