Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2487 ATGCAAACCTTTGAACCCAACTTCACCTTTTGCATCCCAAACACCTTAGGGGCCTCAGTTTCACCATCTGATATTTGCATCACTGATTACTTGCTGCCCCAAGAACTTCAATTTCAAGTTCACATGAGCAATAACAACAACACACAAATGCCTCAAACCACATCTTTCTCCAAGCCTCCAAGATCCTCAAGTCTAAGCAACCGCAAACCCTCCTTGAAAAACATCAAAATCCCTTCCTTAACCTCTGGTCTTGTGATGCCACAGCACATGGAAACAACAGCAAAAACAACACTAGGTGCAACCATGTGTAACAACAGCAATCAAGTTTCTTCTTCTTCATCTTTGGATGATGGCAACAATAGCAGGGAGGATAAGCACTATAGAGGGGTTAGGAGAAGGCCGTGGGGGAAGTTTGCTGCAGAAATTCGGGACCCCAATAGAAAAGGGTCAAGGGTGTGGCTTGGAACCTTTGACACAGCCATAGAAGCTGCTAAGGCTTATGACAAAGCTGCTTTCAAGATGAGAGGGAGCAAAGCCATATTGAACTTCCCTTTGGAGGTTGGAGAGTGTGAAGAATCAGTTTCATGCTGCATCAAGGTTGGTGTGAAGAGAGAAAGAGAGGAAGAAAGTGAGTTAATTATTAGCAATAAGGATAGTAATAAGGTGATGAAGAAAGAAGAGCCCTCTCCCAAAGGGGTGTGCCCTTTGACTCCATCTTGTTGGAAAGGCTTTTGGGACACTGATCTTATGGGAACCATCTTTAGTGTGCCTCCTTTGTCACCATTATCTCCACTAATGGTTGTTTGA 807 0.4399 MQTFEPNFTFCIPNTLGASVSPSDICITDYLLPQELQFQVHMSNNNNTQMPQTTSFSKPPRSSSLSNRKPSLKNIKIPSLTSGLVMPQHMETTAKTTLGATMCNNSNQVSSSSSLDDGNNSREDKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDKAAFKMRGSKAILNFPLEVGECEESVSCCIKVGVKREREEESELIISNKDSNKVMKKEEPSPKGVCPLTPSCWKGFWDTDLMGTIFSVPPLSPLSPLMVV* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2487 268 MobiDBLite consensus disorder prediction 102 129 - -
Pvu7g2487 268 Gene3D AP2/ERF domain 125 186 IPR036955 GO:0003700|GO:0006355
Pvu7g2487 268 Pfam AP2 domain 126 176 IPR001471 GO:0003700|GO:0006355
Pvu7g2487 268 SUPERFAMILY DNA-binding domain 126 186 IPR016177 GO:0003677
Pvu7g2487 268 MobiDBLite consensus disorder prediction 102 117 - -
Pvu7g2487 268 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Pvu7g2487 268 PRINTS Ethylene responsive element binding protein signature 166 186 IPR001471 GO:0003700|GO:0006355
Pvu7g2487 268 MobiDBLite consensus disorder prediction 45 71 - -
Pvu7g2487 268 CDD AP2 125 184 IPR001471 GO:0003700|GO:0006355
Pvu7g2487 268 ProSiteProfiles AP2/ERF domain profile. 126 184 IPR001471 GO:0003700|GO:0006355
Pvu7g2487 268 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 34 252 - -
Pvu7g2487 268 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 34 252 - -
Pvu7g2487 268 SMART rav1_2 126 190 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2487 Pvu-Chr7 48138008 48139162 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2487 123 261 AP2-EREBP Transcription Factor Family AT5G51190 62.162 3.04e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu7g2487 AP2 4.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2487 K09286 - gmx:100795866 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2487 7 48138008 48139162 Pvu7g2487 7 48138008 48139162 ECH
Pvu1g1660 1 41963965 41964626 Pvu7g2487 7 48138008 48139162 PCT