Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2480 ATGGATGCTTCAAAGACCTATAGGAAAAGGCATGAAGATTGCAACAGTAGCACTTCGTCTGGCAAAGAATTGAGGGAAGTGTTTTTGAAACGCAGGAAGGTGAATCGAGCATTGGTCATATTTAGGAACTTGTTTGAGAAGCTAATGCATGAATACAAAGTGTACGAACCTGGGAATTCTAAGGTTAAGACAAAAGCTCTGATGGAGGCAGCAAGGACAATGAGAAGAGAACATCAATGGGAAAACACTCAAAAGTGTGTGGGGCATATACTAGGAATCGATGTCGGTGATGTCTTTCAGAACTGGGTTGAACTCAATGTCATTGGTCTCCATAGACAATTTTGGAATGGGATTGATTATAAGGTAATAAACAATAGTTTGTTGGCCACAAGCATTGTAGTCACGGATCGCTATGATAATGCTATGAAATCTAATGGTACCTTGGTTTATGAAGGTCAAGGAGGAAATCCTAATGTTGGGAGAAATATTTCACTTATTGATCAAAAATTGGAAGGAGGAAATTTGGCCCTGAAAAATAGCATGCAAACTAGAAGTCCCGTGAGGGTTATATTGAAAGTTTGTGGAAAGTTTGATGGTGAGTTCAGTAACACTGGCAACAATTCTCATTACTCATATGTGTATGATGGTTTGTATTTGGTGGACACAACGAAAATAGAAAGAGGCAGATATGGAAAGCTTGTGTTCAAGTTTGCATTAAATAGAATTTTAGGACAACCCCAAACTTGTGTTGCCCTTAAGGGCCATGGCCAAAACTCAAGGCAACTTGCAAGTTTTACTCCTAGGAAGAAACACAAACTGAAAAGTGGTGTAGCTCAAAAGGAGGTTGTTCGCATTAAAGATCTTTCAAATGGTGGCGAGAAGTTTAGTGTTAGGGTGGTGACTTCAAGTGATTGTGTTCAGCTACCCACATCCTTTGATTACGTTGTAAATAACATTTACTCAAACAAGTTCAAGCAGGCAATTCTCCGTGGCTGTGATTGTGCAGACGGGTGTGTTGACAAAGAAAGTTGTGTCTGCTTCAGGAAGAATGGTAGCAGAATGCCGAATGATTGTAATAAAAGACTAGCTTCTGACCTGGAATCATCATTTATATATGAGTGTGGCCCATCTTGCAAGTGCTCCTCTTCTTGCATCAACCGAGTAACTCAGCATGGCATTCAGTTTCAGCTTGAAATCTTCATCACAGAACTGAAAGGTTGGGGTGTTAGAACACGCTCTTTCATTCCCTCTGGAAGCTTTGTATGTGAGTATATTGGAGAAGTGAGTGACTATATGGAGGCTAGATGGAGGCTGGATGATGACTATACATTTCATATGGGTGTTGGAAAGATCTTCATTAATGCAAGTAAATATGGAAACGTTGGAAGATTTATAAATCATAGTTGTTCTCCAAATCTATGTGTCAAAGATGTTATGTATGATCACAATGACAAGAGTCTTCCTCACAAAATGCTGTTTGCTATAAGGGACATTGCTGCTGGTAGAGAGCTGACTTATGATTATAATATCTCTAATGGAAAATTGATTAAGTGTAGGAGTAATACCTGCTACTGTGGAACACGTCAATGCAATGGACAGATCTACATTTAA 1611 0.3929 MDASKTYRKRHEDCNSSTSSGKELREVFLKRRKVNRALVIFRNLFEKLMHEYKVYEPGNSKVKTKALMEAARTMRREHQWENTQKCVGHILGIDVGDVFQNWVELNVIGLHRQFWNGIDYKVINNSLLATSIVVTDRYDNAMKSNGTLVYEGQGGNPNVGRNISLIDQKLEGGNLALKNSMQTRSPVRVILKVCGKFDGEFSNTGNNSHYSYVYDGLYLVDTTKIERGRYGKLVFKFALNRILGQPQTCVALKGHGQNSRQLASFTPRKKHKLKSGVAQKEVVRIKDLSNGGEKFSVRVVTSSDCVQLPTSFDYVVNNIYSNKFKQAILRGCDCADGCVDKESCVCFRKNGSRMPNDCNKRLASDLESSFIYECGPSCKCSSSCINRVTQHGIQFQLEIFITELKGWGVRTRSFIPSGSFVCEYIGEVSDYMEARWRLDDDYTFHMGVGKIFINASKYGNVGRFINHSCSPNLCVKDVMYDHNDKSLPHKMLFAIRDIAAGRELTYDYNISNGKLIKCRSNTCYCGTRQCNGQIYI* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2480 536 Pfam SAD/SRA domain 87 245 IPR003105 -
Pvu7g2480 536 Gene3D SET domain 266 519 IPR046341 -
Pvu7g2480 536 SMART preset_2 285 379 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu7g2480 536 Pfam Pre-SET motif 289 387 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu7g2480 536 SMART set_7 395 515 IPR001214 GO:0005515
Pvu7g2480 536 SMART G9a_1 83 245 IPR003105 -
Pvu7g2480 536 Gene3D - 69 265 IPR036987 -
Pvu7g2480 536 ProSiteProfiles SET domain profile. 395 509 IPR001214 GO:0005515
Pvu7g2480 536 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 8 532 - -
Pvu7g2480 536 Pfam SET domain 438 509 IPR001214 GO:0005515
Pvu7g2480 536 ProSiteProfiles Pre-SET domain profile. 330 392 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu7g2480 536 SUPERFAMILY SET domain 277 517 IPR046341 -
Pvu7g2480 536 ProSiteProfiles Post-SET domain profile. 519 535 IPR003616 -
Pvu7g2480 536 ProSiteProfiles YDG domain profile. 88 241 IPR003105 -
Pvu7g2480 536 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 8 532 - -
Pvu7g2480 536 SUPERFAMILY PUA domain-like 70 251 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2480 Pvu-Chr7 48063859 48066191 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2480 66 534 Su(var)3-9 homologs AT1G73100 35.812 1.36e-83 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu7g2480 SAD_SRA 1.6e-37 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2480 - K11420 vun:114192587 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2480 7 48063859 48066191 Pvu7g2480 7 48063859 48066191 ECH
Pvu1g1703 1 42497653 42503349 Pvu7g2480 7 48063859 48066191 PCT