Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2473 ATGGCTATGTTTGATCTCAATGTTGACATCAACCATGCTGAGGCTGATGCTGGCTCAAGCTGTGCTCAAAAGGGGGCGAAACTGCAAAATTTTCCACCTGAAATCTCAGATTCCAGGACCTCCAACTCCTCTGTGTGGAATCCTGCAGATGAAGATTCCTCAAACAATTCCTCTCCCTTGATTTTTGACATACTGAAGAAAGAGAGGGGTGGCTCAGAGTTTGATGCTGCCACTGAAGGCAACAAGGAGCAAACCATGGCACAAAAGGGAGAGATGGTGACAAGGACCCTTTTCCCTGTGACTTCTTCTGATAAAGGAGGAAGAGTGCCTGATTTCAAATCGGGGTTGTGGGAGAAGACTCAGTTGTCGAACCTGTCCTTTCCTGAGCCTGATGGACAAAATGGACTGAGAACCTTACAACAGAAGCTACCTCATGTGAGGAAAAATAGGAGAGGACCAAGGTCTCGCAGCTCGCAATACCGGGGTGTCACCTTCTACCGCAGGACTGGTAGATGGGAATCACATATTTGGGATTGTGGGAAGCAGGTCTATCTGGGTGGATTTGACACTGCTCAAGCTGCTGCAAGTGCGTACGATAGGGCTGCTATTAAGTTTCGTGGAGTAGATGCTGATATAAACTTTAGTTTGAGAGATTATGAGGAGGATTTGAAGCAGATGAGAGCTTTGAGTAAGGAAGAGTTTGTGCTAGTACTTCGTCGACAAATCAATGGAATCTCGAGGAGAAGTACAACATACAGAGGTTCATTATCTCTTCACAAAGGTGGTCAAGGAGAACCAAGAATGGGACCATTTATTGGCAAGACATTTTGTCCCAAGTCTTCTGAAGGAAAAGTGGAGGCCAGTTTTAGACCTTTTTCCTATAAGGAAAATATAATTGCAAATTCCAGTATAGCAGGCACTTGCCATAATCTTGATTTGAGCCTGGGGATTTCTCCATCTTCTAAAATGTTGAAGAATTGTGATTTTGGTGGAGAGTACTCCTTTGGATGTATGGCTTCTAAGATACCTGAGGAAATAGGAACAATGGAGAAGAGCATGGTGGGCAGAATAAGAAGTGTTCCTTTGCAAAAGTTTTCCAACTTGGCTTCACATATTTGCAGCAATGGCAGCATTGGCTCAAGGCCATTGCAATCAAATGCAGCAGCATCATCAGGATTCGTCTCTTCTTCTGGCTGTCTCATCAGCCACACTTCCAATCAGCACACATATTAA 1233 0.4444 MAMFDLNVDINHAEADAGSSCAQKGAKLQNFPPEISDSRTSNSSVWNPADEDSSNNSSPLIFDILKKERGGSEFDAATEGNKEQTMAQKGEMVTRTLFPVTSSDKGGRVPDFKSGLWEKTQLSNLSFPEPDGQNGLRTLQQKLPHVRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAASAYDRAAIKFRGVDADINFSLRDYEEDLKQMRALSKEEFVLVLRRQINGISRRSTTYRGSLSLHKGGQGEPRMGPFIGKTFCPKSSEGKVEASFRPFSYKENIIANSSIAGTCHNLDLSLGISPSSKMLKNCDFGGEYSFGCMASKIPEEIGTMEKSMVGRIRSVPLQKFSNLASHICSNGSIGSRPLQSNAAASSGFVSSSGCLISHTSNQHTY* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2473 410 MobiDBLite consensus disorder prediction 19 58 - -
Pvu7g2473 410 Gene3D AP2/ERF domain 158 217 IPR036955 GO:0003700|GO:0006355
Pvu7g2473 410 MobiDBLite consensus disorder prediction 33 58 - -
Pvu7g2473 410 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 400 - -
Pvu7g2473 410 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 3 400 - -
Pvu7g2473 410 CDD AP2 158 214 IPR001471 GO:0003700|GO:0006355
Pvu7g2473 410 SUPERFAMILY DNA-binding domain 158 216 IPR016177 GO:0003677
Pvu7g2473 410 SMART rav1_2 159 221 IPR001471 GO:0003700|GO:0006355
Pvu7g2473 410 Pfam AP2 domain 159 207 IPR001471 GO:0003700|GO:0006355
Pvu7g2473 410 ProSiteProfiles AP2/ERF domain profile. 159 215 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2473 Pvu-Chr7 48016768 48020784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2473 3 274 AP2-EREBP Transcription Factor Family AT2G28550 51.943 3.96e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu7g2473 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2473 K09284 - gmx:100776138 624.78