Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2462 ATGTTGAGAATGAATAAAGGGTCACTTGATTACTGGAGGAATTACTTTGGAGCTGCGAACTCTGACATATTTGGCATCATTGACCATGCGATCATGGTGGCTGCTTCTGATTGCCCCGAGGAGTTCAGGATGAGGAGAGATGGGATTGCAGAGAGGTTGTTTTCTTGCAGACTGAGTCGATGTTTGGGGTGTGAGCGGGTGGAATTGGCAGTGTCAGTGGATGATGATGGCGGTGAAGGTGGTGGTGGTTGTAAGAGTGGCGTTGATGGGGCTGGTGCTGAGTTTGAGTCTGAAGCAGGCGCAAGTAAAGAGAGCAAGGTCAATAGTGCCAGAGATGATGATCCTGGAGAGATGAACACGAACCGAGTGAGCAATTACAGCTATGGAGAAGCTGAGGCGTTGACCGATGAGATTGAAGAAGAGTCACAATATGTTGAAGAGGTATTCAGGATCAAGGATGTTTTGCTTAACTATGAAGAAGCGTCTGATTCAGTATTGTTTGATTCATTGAGGAGGCTTCAGCTGATGGAACTCACAGTGGATCTTTTGAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTTCGGAAGCATGGATCAAGTGACATTTGTCGACTAGCACGGACTCTTATCGATGGCTGGAAGGAAATGGTGGATACGTGGGTCAAAGCTACCACAGCTTTTGCAGGTTCAGAAGGTACTCCAGATTCAGTAAATCCATCTGTTGTTGAGGATGAGGATGAAGAAGGCCTTCCATCACCTCCTATGGATGAAGGGGCTTTATTTGCCGCTCCAACTGGTTCTATGGAACTCTCCCAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACATAGTGGGGAATTCATCAGAAACCGTGATCATGGAAGAAGTCCAACTCTGAACAGTAAAAATACAGCAAAGAGGAAACCCCAGGCATCAAATGAGGCAAACATTATTGCCAAGGACAGTAAGGGTCAGCAAGCAAAGAAAAATGAGGCTGCTGTGAGGCCAAATCAACCAGTTATCGGTGATTCTGGTCCTGGTAGACCACCAAAATCAACCATGCAGAAGAAAAGCCATATTGAGCCGCAGGTGCAACAAAATACAGTGAAGAGTACTATCCCAAAAAATCCTTATGTTCGTCAGCTAGATAAACCCAGGTGTTCGGATGATGCGTCAGTCCAAGTGAAGTTAGAAGCCAGTAAGAGGAAACTTCAGGAGCGGTATCAACAAGTTGAAAATGCTAAGAGGCAGCGGACAGTACAGGTTATGGAGTTGCATGACCTCCCAAAGCAAAGTATTGGCCACCGAAATCCGCATGTCAAACCTGGAAATCAAAGGAAGCAATGGGGCCAGGGACGAAGATAG 1374 0.4629 MLRMNKGSLDYWRNYFGAANSDIFGIIDHAIMVAASDCPEEFRMRRDGIAERLFSCRLSRCLGCERVELAVSVDDDGGEGGGGCKSGVDGAGAEFESEAGASKESKVNSARDDDPGEMNTNRVSNYSYGEAEALTDEIEEESQYVEEVFRIKDVLLNYEEASDSVLFDSLRRLQLMELTVDLLKATEIGKAVNPLRKHGSSDICRLARTLIDGWKEMVDTWVKATTAFAGSEGTPDSVNPSVVEDEDEEGLPSPPMDEGALFAAPTGSMELSQFFDGMDDDGNPRHSGEFIRNRDHGRSPTLNSKNTAKRKPQASNEANIIAKDSKGQQAKKNEAAVRPNQPVIGDSGPGRPPKSTMQKKSHIEPQVQQNTVKSTIPKNPYVRQLDKPRCSDDASVQVKLEASKRKLQERYQQVENAKRQRTVQVMELHDLPKQSIGHRNPHVKPGNQRKQWGQGRR* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2462 457 MobiDBLite consensus disorder prediction 229 255 - -
Pvu7g2462 457 MobiDBLite consensus disorder prediction 300 323 - -
Pvu7g2462 457 Pfam TFIIS helical bundle-like domain 170 218 IPR017923 -
Pvu7g2462 457 MobiDBLite consensus disorder prediction 272 390 - -
Pvu7g2462 457 MobiDBLite consensus disorder prediction 359 378 - -
Pvu7g2462 457 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 143 231 IPR035441 -
Pvu7g2462 457 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 6 456 IPR044805 -
Pvu7g2462 457 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 229 IPR035441 -
Pvu7g2462 457 Coils Coil 397 424 - -
Pvu7g2462 457 MobiDBLite consensus disorder prediction 99 118 - -
Pvu7g2462 457 MobiDBLite consensus disorder prediction 433 457 - -
Pvu7g2462 457 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 6 456 - -
Pvu7g2462 457 ProSiteProfiles TFIIS N-terminal domain profile. 146 221 IPR017923 -
Pvu7g2462 457 CDD TFIIS_I 146 219 - -
Pvu7g2462 457 MobiDBLite consensus disorder prediction 97 125 - -
Pvu7g2462 457 MobiDBLite consensus disorder prediction 279 299 - -
Pvu7g2462 457 SMART TFS2_5 148 220 IPR003617 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2462 Pvu-Chr7 47933685 47940835 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pvu7g2462 Med26 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2462 - - gmx:100775579 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2462 7 47933685 47940835 Pvu7g2462 7 47933685 47940835 ECH
Pvu1g1250 1 33857620 33861626 Pvu7g2462 7 47933685 47940835 PCT