Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2421 ATGTCTCCTACACATAAACCTGCATTCTCTCATTCACTCAATCTTTTGGCTTCACTTTCAATACTCCTAGTGGTCCCTTCCTCTTGTTTCAACCCCAAAAAAATTGCTAATGCTTCCATTGATTCATCCAATTGGTCACCTGGTGTGGCTACTTGGTATGGACCTGCCAATGGGGATGGAAGTGAAGGTGGTGCTTGTGGTTATGGCAGCACTGTTGGGGTGCCTCCATTCTCATCAATGATAGCAGCAGGAAGCCCTCCATTGTTTGAATCAGGCAAAGGCTGTGGTTCTTGTTACCAGGTGAAGTGCAGAGGGAATGAAGCGTGCTCAGGCAAACCTGTGAGGGTAGTGATCACTGATCTGTGTCCTGAATGTGAAGCCGCACATTTTGATTTGAGTGGTGCTGCTTTTGGTGCAATGGCAGTTCCAGGGCAAGGCAATCAGCTACGCAATGCTGGCAAAATAGTCATTGAATACAGCAAGGTTGAATGCGAGTATCGCGGCATGTCAATAGCTTTTCGTGTGGACTCTGGATCGAACCAAGAATATTTTGCAGTGATGGTTGAATACGAGGAGGGAGATGGTGAACTTGACAAGGTTGAACTGAAGGAAGAATCTGCAGGATCATGGATTCCCATGCAAAAATCTTGGGGTGCAGTTTGGAAATTTAACAAAGGGTCACCACTGAGAGCACCATTATCTATCAAGCTAACCAACTTTAGGTCTAGGAAGACTGTTGTGGCTAGCAATGTCATCCCTCATGGTTGGACACCTGGTCATACTTATAGATCAAATGTTAATTTTTGA 807 0.4523 MSPTHKPAFSHSLNLLASLSILLVVPSSCFNPKKIANASIDSSNWSPGVATWYGPANGDGSEGGACGYGSTVGVPPFSSMIAAGSPPLFESGKGCGSCYQVKCRGNEACSGKPVRVVITDLCPECEAAHFDLSGAAFGAMAVPGQGNQLRNAGKIVIEYSKVECEYRGMSIAFRVDSGSNQEYFAVMVEYEEGDGELDKVELKEESAGSWIPMQKSWGAVWKFNKGSPLRAPLSIKLTNFRSRKTVVASNVIPHGWTPGHTYRSNVNF* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2421 268 Pfam Expansin C-terminal domain 171 253 IPR007117 -
Pvu7g2421 268 PANTHER EXPANSIN-B2-RELATED 20 268 - -
Pvu7g2421 268 SUPERFAMILY Barwin-like endoglucanases 39 168 IPR036908 -
Pvu7g2421 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 169 IPR007112 -
Pvu7g2421 268 PANTHER EXPANSIN-B3 20 268 - -
Pvu7g2421 268 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576
Pvu7g2421 268 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Pvu7g2421 268 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Pvu7g2421 268 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Pvu7g2421 268 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Pvu7g2421 268 PRINTS Expansin/Lol pI family signature 250 264 IPR007118 GO:0005576
Pvu7g2421 268 Gene3D - 166 268 IPR036749 -
Pvu7g2421 268 Pfam Lytic transglycolase 82 147 IPR009009 -
Pvu7g2421 268 Gene3D - 29 165 IPR036908 -
Pvu7g2421 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 264 IPR007117 -
Pvu7g2421 268 SUPERFAMILY PHL pollen allergen 171 264 IPR036749 -
Pvu7g2421 268 SMART dpbb_1 81 159 IPR007112 -
Pvu7g2421 268 PRINTS Major pollen allergen Lol pI signature 83 94 IPR005795 GO:0005576|GO:0019953
Pvu7g2421 268 PRINTS Major pollen allergen Lol pI signature 103 113 IPR005795 GO:0005576|GO:0019953
Pvu7g2421 268 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576|GO:0019953
Pvu7g2421 268 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576|GO:0019953
Pvu7g2421 268 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576|GO:0019953
Pvu7g2421 268 PRINTS Major pollen allergen Lol pI signature 219 236 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2421 Pvu-Chr7 47594950 47596541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2421 27 268 Expansin Gene Family AT1G65680 58.300 1.22e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2421 - - gmx:548090 377.096