Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2372 ATGTCGATAAACCACTACTCCATGGAACTTCCCGAAACAGCACTGTGGTGGCCCCAACAACAGCAACAACCCATCCTAATGGAACCAACCCCAAACCCCTCCTCCACTTCCTGGCCCTCTGCAGACCCTCTGTGTCTCAACCTCAACAACCAAAACGATGACGTAGAGGAAGACGAGGAAGAGGACCGAACAACAACCACTACACAGCAAGAAGAAACTGAAGACGAGAAGGAACCCATGTTCGAGAAGCCTCTGACTCCAAGCGACGTGGGGAAGCTCAACCGCCTCGTAATCCCCAAGCAGCACGCCGAGAAGTACTTCCCGCTCAGTGGTGGCGGTGGCGGCGACTCGGGCGAGTGCAAGGGGCTGCTATTGAGTTTCGAGGACGAGTCGGGTAAGTGCTGGCGGTTTCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAAGGGTGGAGCCGCTATGTCAAGGACAAGCGCCTCGACACCGGCGACGTCGTCTTGTTCGAGCGCCACCGCGCCGACGCTCACCGCCTCTTCATCGGATGGAGGCGCCGGCGACACGGCGAGACCTCGCCGGTGCACGTTAGCAGCAGGGCGGTGGGGCACGGGAAGAGTGGCAATGGGAATAGTAAGAATGAGGCTGCTGCGGCTACTGGAGGTGGTCTCGGGTGGACAAGAGGGTTCTATTCTGCGCATCCTTATCCTACGCATCAGCAGCACCTGCATAACCATCAGCCCTTGCCATACCAATACGACTGTCTTCATGCAGGAAGAGGGTCCGAAGGTCAGAGGGAAAGGAGGAGAGCAGTGGGAAAGAGTGGGAGTGGGAGTTCGAGTTCAAGTTCTAGTTCAAGAGTACTTAGGCTGTTTGGGGTGAACATGGAATGCGAAGCTGAAGATGATTCTGGACCCTCCACACTTGAATGCTCCTACAATAGTACCAACATGCCCTCCACACAGGGCACACAAAACCCTCACCATTTCTACCATCCCCACCCCCCTCAACCTCAACCTCATCAAATCCTACGTCACCAACCATACTACTACTACTAA 1062 0.5565 MSINHYSMELPETALWWPQQQQQPILMEPTPNPSSTSWPSADPLCLNLNNQNDDVEEDEEEDRTTTTTQQEETEDEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGGGGGDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDTGDVVLFERHRADAHRLFIGWRRRRHGETSPVHVSSRAVGHGKSGNGNSKNEAAAATGGGLGWTRGFYSAHPYPTHQQHLHNHQPLPYQYDCLHAGRGSEGQRERRRAVGKSGSGSSSSSSSSRVLRLFGVNMECEAEDDSGPSTLECSYNSTNMPSTQGTQNPHHFYHPHPPQPQPHQILRHQPYYYY* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2372 353 MobiDBLite consensus disorder prediction 255 287 - -
Pvu7g2372 353 MobiDBLite consensus disorder prediction 320 345 - -
Pvu7g2372 353 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 47 317 IPR044800 GO:0003700
Pvu7g2372 353 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 47 317 - -
Pvu7g2372 353 SMART B3_2 81 189 IPR003340 GO:0003677
Pvu7g2372 353 ProSiteProfiles B3 DNA-binding domain profile. 81 189 IPR003340 GO:0003677
Pvu7g2372 353 MobiDBLite consensus disorder prediction 66 83 - -
Pvu7g2372 353 Gene3D - 69 198 IPR015300 -
Pvu7g2372 353 SUPERFAMILY DNA-binding pseudobarrel domain 76 188 IPR015300 -
Pvu7g2372 353 CDD B3_DNA 79 179 IPR003340 GO:0003677
Pvu7g2372 353 Pfam B3 DNA binding domain 81 188 IPR003340 GO:0003677
Pvu7g2372 353 MobiDBLite consensus disorder prediction 21 51 - -
Pvu7g2372 353 MobiDBLite consensus disorder prediction 193 220 - -
Pvu7g2372 353 MobiDBLite consensus disorder prediction 21 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2372 Pvu-Chr7 47078235 47080493 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2372 1 313 RAV Transcription Factor Family AT5G06250 42.006 2.13e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu7g2372 B3 9e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2372 - - aprc:113872948 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2372 7 47078235 47080493 Pvu7g2372 7 47078235 47080493 ECH
Pvu1g2001 1 45885545 45887392 Pvu7g2372 7 47078235 47080493 PCT