Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2319 ATGGCCGTTCCCGCGACGGTCGCCGCCGCGCCGGCTTCGCTTTACGTTGGAGATCTTCACCCTGACATTTCCGACTCCCAGCTTTACCAGGCTTTCCAGGAATTCAAAAGCCTCACTTCCGTTCGCGTTTGCAGAGATTCCTTGACGAGGACGTCGCTCCGTTACGGTTATGTCAACTTTATGTCTCAGCAAGACGCAATTCGTGCAATCAAGGTGAAAAACAATTCTTATCTTTTTGGAAAAGTGATAAGGGTCATGTGGTCACATCGCGATCCTAATGCAAGGAAAAGTGGCAGGGGGAATGTGTTTGTTAAGAACTTGGCAGAATCCATAGATAATGCGGGGCTACATGATTTATTTCAAAAATATGGGAATGTTCTGTCCAGCAAAGTTGTCGTGTATGAGGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATTATGCCATTGAGAAGCTGAATGGCTCTACTGTGAGAGACAAGCAGATATATGTTGGGAAGTTTGTCAGAAAAGGTGACCGCACTTTGCCTGGCAATGATACCAAGTTTACAAATTTGTACATTAAAAACTTGGACTCAGATATTACGGAAGCACTTCTTCAGGAAAAGTTCTCCTCTTTTGGAGAAGTTATTAGCTTGGCTATTGCAAAGGATGCCAATGGGCTATCCAAGGGTTTTGCATTTGTTAACTATGATAATCCAGATGATGCTAGAAAGGCGATGGAAGCAATGAATGGATTGCAATTTGGTTCAAAGAATCTGTATGTAGCTAGGGCACAGAAGAAGGCTGAACGTGAGCAAATCTTGCATCATGAATTTGAGGAAAAACGCAAGGAGCAAATACTGAAATCAAAGGGCTCTAACCTTTATGTGAAGAACATTGATGACGGTGTTAGTGAAAAAGAACTACGAGATCTGTTTAGTTCTTGTGGCACAATAACTTCTGTAAAAGTTATGCGAAATGACAAAGGGATAAGCAAGGGCTTTGGTTTTGTCTGCTTCTCCAATCCTGAGGAGGCTAATAAAGCTGTGAGCACTTTTTATGGATGCATGTTCCACCATAAGCCACTGTATATTGCTATCGCTCAGAGGAAAGAGGATAGGAAAACACAGTTGAAGCTCAACTATGGACCGCAACAAGCAGGATTGGATGGACCTTCAACTGCAGTTGTCCGTGGTGGCTTTCCATCTTACTTCTATCCGAATGTTACTTCACAGATGCTTCAATCTGGGCTTTTGTATCAACCTCTGGGATTGGGATCAGGATGGAGGGCTAATGACTTTACGCCTCCTACTAGATCATTTCAACAATCACAGGTTCCTATTGTTCCTAACACTACTAGGCATCATAGGCAAAATAGGGGCAGGATGAATTCAGTGGGAAAAGCTCAGTCTGGTGTATATATCCCGCAACTGCAACACTATTATCAGCCAATGGACTCAAGAGTCGAGTACATGGCAGCTTAG 1488 0.4328 MAVPATVAAAPASLYVGDLHPDISDSQLYQAFQEFKSLTSVRVCRDSLTRTSLRYGYVNFMSQQDAIRAIKVKNNSYLFGKVIRVMWSHRDPNARKSGRGNVFVKNLAESIDNAGLHDLFQKYGNVLSSKVVVYEDGKSKGYGFVQFESEESANYAIEKLNGSTVRDKQIYVGKFVRKGDRTLPGNDTKFTNLYIKNLDSDITEALLQEKFSSFGEVISLAIAKDANGLSKGFAFVNYDNPDDARKAMEAMNGLQFGSKNLYVARAQKKAEREQILHHEFEEKRKEQILKSKGSNLYVKNIDDGVSEKELRDLFSSCGTITSVKVMRNDKGISKGFGFVCFSNPEEANKAVSTFYGCMFHHKPLYIAIAQRKEDRKTQLKLNYGPQQAGLDGPSTAVVRGGFPSYFYPNVTSQMLQSGLLYQPLGLGSGWRANDFTPPTRSFQQSQVPIVPNTTRHHRQNRGRMNSVGKAQSGVYIPQLQHYYQPMDSRVEYMAA* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2319 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Pvu7g2319 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Pvu7g2319 495 Gene3D - 102 180 IPR012677 -
Pvu7g2319 495 Coils Coil 263 283 - -
Pvu7g2319 495 SMART rrm1_1 192 264 IPR000504 GO:0003723
Pvu7g2319 495 SMART rrm1_1 295 367 IPR000504 GO:0003723
Pvu7g2319 495 SMART rrm1_1 13 86 IPR000504 GO:0003723
Pvu7g2319 495 SMART rrm1_1 101 173 IPR000504 GO:0003723
Pvu7g2319 495 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 460 IPR006515 GO:0003723
Pvu7g2319 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Pvu7g2319 495 CDD RRM4_I_PABPs 293 371 - -
Pvu7g2319 495 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Pvu7g2319 495 Gene3D - 181 273 IPR012677 -
Pvu7g2319 495 PANTHER POLYADENYLATE-BINDING PROTEIN 5 488 - -
Pvu7g2319 495 CDD RRM2_I_PABPs 98 174 IPR045305 -
Pvu7g2319 495 SMART rrm2_1 295 367 IPR003954 GO:0003676
Pvu7g2319 495 SMART rrm2_1 192 264 IPR003954 GO:0003676
Pvu7g2319 495 SMART rrm2_1 101 173 IPR003954 GO:0003676
Pvu7g2319 495 PANTHER RNA BINDING PROTEIN 5 488 - -
Pvu7g2319 495 CDD RRM1_I_PABPs 13 92 - -
Pvu7g2319 495 Gene3D - 274 402 IPR012677 -
Pvu7g2319 495 Gene3D - 5 101 IPR012677 -
Pvu7g2319 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Pvu7g2319 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Pvu7g2319 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Pvu7g2319 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Pvu7g2319 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Pvu7g2319 495 SUPERFAMILY RNA-binding domain, RBD 190 374 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2319 Pvu-Chr7 46541051 46545475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2319 12 461 Eukaryotic Initiation Factors Gene Family AT2G36660 56.264 4.01e-178 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2319 K13126 - gmx:100807057 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2319 7 46541051 46545475 Pvu7g2319 7 46541051 46545475 ECH
Pvu1g1905 1 44862389 44867696 Pvu7g2319 7 46541051 46545475 PCT