Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2310 ATGGAGTGGAATGGGAGCACAAGACGTTATGTTCCTCGACCAGAGTCTTCCTTCAGCTTCCTTTACAACTACAACTACACCCCTTACCCAGGAATGGAAGTGAAGCAACAAAGTCTAGCAGAGTCAAGTTCATCCATGGAAAAAATGAACTGCGGGAACGACAAGAAGAAGAGATTAACAAGTGACCAGTTAGACTCGTTGGAGAGTAGTTTTCAGAAGGAGATAAAGCTGGACCCTGATAGGAAGATGAAGCTCTCCAAGGAGTTAGGGCTTCAACCTCGCCAAATTGCCGTTTGGTTCCAAAACAGGCGTGCAAGGTGGAAGAACAAGCAACTTGAACACTTGTACGATTCACTTAAACAGGAATTTGATGTCATATCCAAGGAAAAACAGAAGCTAGAGGAAGAGGTAATGAAGTTGAAGGGTATGCTGAGAGAGCAAGCTTCTAGAACCCAAGTGTCAACAGGTTACACAGAAATCTCTGGGGAAGAAACAGTAGAAAGCACGTCAGAGGCTCTGCGTTGCTCCAAACGGAGAACACTGCAGCCACAGCAGCAGCAGCAGCAGCATCAGAATATTGGAGAAGGAAACTGTTCTTTCACTTTGGAAGATTACAACACAGTTCCAGTACTACCCTACTGGCCTGGGGTCCCTTACTATCCCTAA 666 0.4565 MEWNGSTRRYVPRPESSFSFLYNYNYTPYPGMEVKQQSLAESSSSMEKMNCGNDKKKRLTSDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLEEEVMKLKGMLREQASRTQVSTGYTEISGEETVESTSEALRCSKRRTLQPQQQQQQHQNIGEGNCSFTLEDYNTVPVLPYWPGVPYYP* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2310 221 Pfam Homeodomain 55 109 IPR001356 GO:0003677
Pvu7g2310 221 Gene3D - 46 116 - -
Pvu7g2310 221 CDD homeodomain 55 111 IPR001356 GO:0003677
Pvu7g2310 221 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Pvu7g2310 221 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Pvu7g2310 221 Pfam Homeobox associated leucine zipper 110 144 IPR003106 GO:0006355|GO:0043565
Pvu7g2310 221 SMART HOX_1 53 114 IPR001356 GO:0003677
Pvu7g2310 221 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Pvu7g2310 221 SUPERFAMILY Homeodomain-like 52 120 IPR009057 -
Pvu7g2310 221 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Pvu7g2310 221 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 212 - -
Pvu7g2310 221 MobiDBLite consensus disorder prediction 37 63 - -
Pvu7g2310 221 Coils Coil 102 150 - -
Pvu7g2310 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 212 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2310 Pvu-Chr7 46465483 46467655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2310 1 140 Homeobox Transcription Factor Family AT5G03790 53.086 5.66e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu7g2310 Homeodomain 2.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2310 - - gmx:100778007 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2310 7 46465483 46467655 Pvu7g2310 7 46465483 46467655 ECH
Pvu1g1914 1 44978297 44979965 Pvu7g2310 7 46465483 46467655 PCT
Pvu7g2310 7 46465483 46467655 Pvu1g1915 1 44995510 44997206 PCT