LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu7g2306	ATGGCCTCTTGCGACGACGACGACGACTTCTCTCTCCTCCGTGACGATAACCACCACCTCCACCAACCTTACGCGCCGCACCACCACTTCTCCCCCTCCGCCGTCGCCGTCGCTCCTGTCCCACCCAAATCCGTCGCCGACGACGCCGAGGACTACGGAAACCCCTTCGACGACGATGGCGGCAGTGAGAAGCGCAAGGACCGCGAGGAGATCGGCGAGGGAGCTGCGTCGTACGGATTCAACAAGAGATCTAAGGCTCCGCCGTCGAGCACAGGCAGCGCCGAGTACCGGAAGGACAGGGAGGAGTGGAGCGACACAGCGATCGTGTGCCTCCTCGAGGCGTACACGGAGAAGTTCACACAGCTGAATCGGGGAAACCTGAGAGGAAGAGATTGGGAGGAGGTTGCGTTGGTGGTGAGCGGACGGTGCGAGAACCAATCGAAGAGCGTGGAACAGTGTAAGAACAAGGTCGATAACCTAAAGAAGAGGTACAAATTGGAGCGACATAGAATGAGCAGTGGCTGCATTTCCACCAGTCACTGGCCTTGGTTCAAACAATTGGAGCAGATTGTCGGGAATTCTCTTCCGGCGAAATTTCCCGATGAGGATAAAGCGGTTGTTTCTGCCGGAACTTCGCCCAGACAATCGAAGAGATATGGAGTGGCAACACCCAGTACTGGTGGTCAAGCGAATAGCATGAGGTCAAAAGCACTGACAAACCTTAGATGGCGGAGGGTAGTCTTCAAAATTAGTGGAGCAGCTCTTACTGGATCTGATACCTGCAACATTGACCCTAAGGTGGCTATGTTAGTTTCAAGAGAAGTTGCCATAGCTTCCCGCCTTGGTGTTGAGGTGGCTATTGTTGTTGGAGGTCGTAATTTCTTCTCTGGAGATGCATGGGTAACTGCGACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGCATGATGGCAACAGTGATGAATTCAATATTGCTCCAATCAACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAATTGCCATGCAGGAGTTTGCTGAACCATACAATAGGCAGCGGGCGATCAGACATCTTGAGAAAGGAAGAGTTGTTATATTTGGTGGCATCAGTTTTGGTGCTGGCAATCCACTTTTCTCAACTGACATAGCTGCAGCTCTTCGTGCTTCAGAGCTTAATGCTGAAGCGGTCCTCAAGGGTACTAATGTAGATGGTGTGTATGACTGCAACTCACGAGATAACAATTTCACTTTTGAGCACATATCCTTCAGAGAGCTGGGGTCAAGAGGAGTCACCTCTATGGATGCGTCAGCGCTGACATTCTGCAAGGGAAATGCCATTCCTGTCGTGGTTTTTAATCTACTGGAGCCTGGGAACATCTCTAAAGCTTTATGTGGAGAACAAGTTGGCACACTAATTGATGAAACTGGAGCAGTAAGCTAA	1449	0.5079	MASCDDDDDFSLLRDDNHHLHQPYAPHHHFSPSAVAVAPVPPKSVADDAEDYGNPFDDDGGSEKRKDREEIGEGAASYGFNKRSKAPPSSTGSAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVALVVSGRCENQSKSVEQCKNKVDNLKKRYKLERHRMSSGCISTSHWPWFKQLEQIVGNSLPAKFPDEDKAVVSAGTSPRQSKRYGVATPSTGGQANSMRSKALTNLRWRRVVFKISGAALTGSDTCNIDPKVAMLVSREVAIASRLGVEVAIVVGGRNFFSGDAWVTATGLERCTAYQVGMMATVMNSILLQSTLEKMGVQTRVQTSIAMQEFAEPYNRQRAIRHLEKGRVVIFGGISFGAGNPLFSTDIAAALRASELNAEAVLKGTNVDGVYDCNSRDNNFTFEHISFRELGSRGVTSMDASALTFCKGNAIPVVVFNLLEPGNISKALCGEQVGTLIDETGAVS*	483

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu7g2306	482	Gene3D	-	103	166	-	-
Pvu7g2306	482	SUPERFAMILY	Carbamate kinase-like	242	475	IPR036393	-
Pvu7g2306	482	Gene3D	-	234	481	IPR036393	-
Pvu7g2306	482	PANTHER	URIDYLATE KINASE	59	481	-	-
Pvu7g2306	482	MobiDBLite	consensus disorder prediction	209	234	-	-
Pvu7g2306	482	Coils	Coil	143	170	-	-
Pvu7g2306	482	Pfam	Myb/SANT-like DNA-binding domain	100	190	IPR044822	-
Pvu7g2306	482	PANTHER	ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN	59	481	IPR011817	GO:0006221\|GO:0009041
Pvu7g2306	482	Hamap	Uridylate kinase [pyrH].	241	476	IPR015963	GO:0005737\|GO:0006221\|GO:0033862
Pvu7g2306	482	MobiDBLite	consensus disorder prediction	208	234	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu7g2306	Pvu-Chr7	46426949	46431628	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu7g2306	76	200	Trihelix Transcription Factor Family	AT3G14180	37.500	1.10e-16	80.5

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Trihelix	Pvu7g2306		AA_kinase	2.8e-25	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu7g2306	-		-	gmx:100805459	845.114

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