Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2296 ATGAACCCCACTGATGACAACTTTCCCAAGCCCTTGGAGGTTCTGCAAATGAACCCGGTTCCACCGTTTTTGTCCAAAACCTTCGACCTCGTCGATGACCCCACTCTCGACCCGATTATCTCCTGGGGCTCCACGGGCTTTAGCTTCGTCGTCTGGGACCCTCTGGAGTTCGCCAGAATCGTGTTGCCGCGACATTTCAAGCACAACAATTTCTCCAGTTTCGTTCGCCAGCTCAATACTTATGGATTCCGCAAGATTGACACAGACAAGTGGGAGTTTTTCAATGAAGCATTCCAGCGATCGAAGAAGCACTTGCTGAAGAACATACAAAGACGTAGGTCAACACAATTCCAGCAGGTTGGTAGCTATATTGGAATTGGATCTTCTACTGAGGCAGGGAGGTCTGAGGTTGAGGTTGAGATAGAAAAGCTTAGGAATGAAAGGACTATGTTGATGGAAGAGGTGGTTGATTTGCAGCAAGAACAACGAAGAACGGCTAACCGTGCAGGAGAAGTGAATCAAAGGCTCCAATCTGCAGAACAAAGGCAGAAACAAATGGTTTCTTTCCTGGCCAAGTTGATCCAAAACCCAGCCTTTTTAGCCCGCCTTAGGCATAAGAAGGAACAAAGAGAAATAGATTCTCCAAGAGTGGTAAGGAAGTTTGTCAAGCAGCACCAACATGAGTCTGGAACAGTAGAAACTCTCCAAGAAGGACAGATAGTGAGGTACCAACCTGATTGGAGAAATATAGACATGTCTTCTGAAACTCCAAAACTAAGTCAGGTTTCCATTGAACAGTCACCTCACTACCTTTCACAGTGTTTGGCAGGAGAAATGAGTGGAGGTGCAGAAGATCTGACTTCTCAAATTGAGAATATTGTAACAGATGATTTGGCTGCAGAGCACGGGATCACACCACCCCAAGAAATGATGATTGGATCCAGCTTTGGAGCTGAAGACCCCCTTTACAAAGGGAAGAGTGTTATGAGCCCAAGTCTAGAACTTCCTCCAGAGTATTTTACTTCATTCCCAGAGGTTTTGACCCAGGAGAAAGGCTTTCAAGATTTTTCTGCTCTTGGAACTGAAGACATTATCAAGCTTGAAGACATATGGGACTCGGACCTCAATCTTAGTGGTGCTGGTTCAACCTGTGGGAATGAGCTGTGGGGCAATCCTATGAATTATGAAGATGTTCCAGAGTTTGGAGTAACAAGTGGCATGTCTGAATCAGACATCTGGGATATTGGCTCTGGAAGTTTGGGAATTCATAAGTGGCCAGGTGATGAACCTTCTATTGGTGAAATAGATGGTCAAGTTGGTGAGCCAAAAGAAGATAGGCCTCAGAATCTTGATCCATAG 1359 0.454 MNPTDDNFPKPLEVLQMNPVPPFLSKTFDLVDDPTLDPIISWGSTGFSFVVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRSKKHLLKNIQRRRSTQFQQVGSYIGIGSSTEAGRSEVEVEIEKLRNERTMLMEEVVDLQQEQRRTANRAGEVNQRLQSAEQRQKQMVSFLAKLIQNPAFLARLRHKKEQREIDSPRVVRKFVKQHQHESGTVETLQEGQIVRYQPDWRNIDMSSETPKLSQVSIEQSPHYLSQCLAGEMSGGAEDLTSQIENIVTDDLAAEHGITPPQEMMIGSSFGAEDPLYKGKSVMSPSLELPPEYFTSFPEVLTQEKGFQDFSALGTEDIIKLEDIWDSDLNLSGAGSTCGNELWGNPMNYEDVPEFGVTSGMSESDIWDIGSGSLGIHKWPGDEPSIGEIDGQVGEPKEDRPQNLDP* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2296 452 MobiDBLite consensus disorder prediction 423 452 - -
Pvu7g2296 452 Gene3D - 15 113 IPR036388 -
Pvu7g2296 452 SUPERFAMILY "Winged helix" DNA-binding domain 19 112 IPR036390 -
Pvu7g2296 452 Pfam HSF-type DNA-binding 23 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu7g2296 452 ProSitePatterns HSF-type DNA-binding domain signature. 62 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu7g2296 452 SMART hsfneu3 19 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu7g2296 452 Coils Coil 134 161 - -
Pvu7g2296 452 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 14 442 - -
Pvu7g2296 452 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 442 IPR027725 -
Pvu7g2296 452 MobiDBLite consensus disorder prediction 438 452 - -
Pvu7g2296 452 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu7g2296 452 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu7g2296 452 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2296 Pvu-Chr7 46292132 46295237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2296 8 415 HSF AT5G03720 45.060 1.62e-101 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu7g2296 HSF_DNA-bind 1.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2296 K09419 - gmx:100780835 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2296 7 46292132 46295237 Pvu7g2296 7 46292132 46295237 ECH