Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2294 ATGGAGAACTCGCGTAGACCGTTCGATAGATCGCGAGAGCCAGGACCCAAGAAGGCCCGATTGATTGAAGAGCTGGATCGGGCTCCGAATTCGGGTGCGAGACAGTTTCCTCAGCTACAAGTGATTTCTGGGGTTGCAACGTTACCGTCTGCAAGGTTTAGAACAAACGAAAGAGACCTTGAAAGCAATGATTTTGGTCGCCGGGGTGGTGCTGGAGGTGGCGGTTATCAGCCCCAGCCACTGCCATTTCAGGAGCTTGTTACTCAGTATAAGGCAGCTCTTGCAGAACTTACTTTCAACTCGAAACCGATAATTACCAACTTGACTATCATTGCAGGGGAGAACCAAGCTGCGGAGAAGGCCATTGCAGCAACTGTTTGTGCTAACATTCTAGAGGTTCCTAGTGATCAAAAGCTGCCATCACTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTTGCTGCCAGGCTACCTGAGGTATTCTGCAAAGCATACAGACAGGTTGATCCTTCTGTCCATCAAAGTATGAGACATCTTTTCGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGATTATTGAGAAAGAATTAGGCTTCACTTCTGCAGTCAATGGCTCATCTGCTTCTGCTACACTCAGGAGTGATTCACAGTCACAACGCCCACCTCATAGTATCCATGTTAATCCCAAGTATTTAGAAAGGCAACGTCTACAGCAGTCCAGCAGGAATGATCGTGCTCGAAGAGATGCATTCAATGATTCTGTTCCGGAAAAGAGCACTGGTGCATCCTATGGAAGCAATGAATTTGGTTCCAATATTTCAAGGAATTTGGGCTTGGGTATCAGCCGACCTGGTGGTAGGGTGACTGAGTCAGGACATGACAAAGGTTGGTACAACAAATCTGGTGTTGTTGCGGGGACCATGCCTGGACAAAGAAATGGTTTGAGTCTCAAGTATAGTTTTTTGAATACTGAAGCACCAAAGTCCATGATTTTGGATACACATCATCAACCAGCACAAAAAATAACAAGCACACAGAGCAGTGTGATCTCAAATAGCTGGAAAAATTCTGAGGAAGAGGAGTACACATGGGATGAGATGAACTCTGGCTTGACTGGTCATGGTACATCTATTGTTAGCAGCTTGAGCAAAGATGCTTGGACTGCTGATGATGATAATTTGGAAGTTGAAGATCGGAACCAAGTCAGAAATCCTTTTGTGGAGCAGCACTCTATTGATGAGTTGGATCGGAAGGCTGGTCAGTTGAGCAGATTTGTGTCCACACCGTCTAGTACAAGTGCCTCTACTGCCAGGATGGGGAATCGGCCTTTCCTGTCAAATGCATCCATAGGATTGCCAGGAGTTGCAGGACCATTTCATTCTTTGGGAGATGAAAACCCTTCTGGACAGTCACCTTTGCGACGGAGGTCTCCATCACCGCCAGGTCCATTCTCTTCAATGACTTTCCAGGCAAGGCATCAGCAGCAATTTGGCACTTCTCACAATGAGGTTACTATTAAGACTGAGAAGCCACCTGTGTCAAAAGTTTCTTTAGCCAGAGAAACTAAAAGTAGCACGAGTACAGGGAATCTTCCAACTCGATTAGGTGTTCGACCTTCACGAACAGGTGGTCCTTCCCCTGCCACATTAATTTCTTCAGTGTCCACAATTGCATTACCATCATCATTAGGTCCTTCCAGTGATAATTCACCTGCTCTCTCAAAAATACCTCAAAGAAAGGTTGGACAACCGCCTAGGTTATCTACTCTACCACCTGCATCCTCTAATGTCAGCAGTGCCTCAGCTCAGACAAGTGATGCCAATAATACCTTGAATCCAATTGCTAATCTTTTAAGCTCTTTAGTTGCAAAAGGCTTGATATCTGCAGAAAAAGAATCAACAACTAAGGTGCCCTCTGAGTTGCTGACTCGGTTGGAAGAAGAAAGCGATAGCATTACCACCGGTAACTCTTTGCCTGTGGCCTCAGCTTCTGGTTCTGCAGCTGTTCCGGTCCCTTCTATCAAAGATGATGTTGATGACACTGCAAGAACACCCATATCCTTGTCTGAATCAACCAGCCCAGGAGTTGTAAATCTCATTGGCTTTGAGTTTAAGCTTGATGTGTTACGAGAATTCCATTCATCTGTAATTAGTGGTTTATTTGATGATCTTCCACATCATTGCAGCATTTGTGGCTTTAGACTTAGATTCCAGAAACAGTTAAATAGACACTTGGAGTGGCATGCCACAAGGGATAGAGAAGATAATGGTTTAACTAAGGCATCGAGATGGTATCTTAAGTCAAGTGACTGGATTTTTGGCAAGGCTGAATGTGTATCAGAGAATGAGGCTGATTCTGTAGATACATATGGCAATGAAGCAGACAGAAGTCAAGAAGATGCTACTGTTGTAGCAGCAGATGAAAACCAGTGCTTGTGTGTGTTGTGCGGTGAGCTATTTGAAGATTTTTACTGTGAGGAAAGTGGGGGGTGGATGTTCAAAGGAGCTGTTTACTTTGCTAACTCTGATAGCAACAGTGAGATGGGATTTGGAGATACGAGTACAGGAAGGGGTCCTATCATTCATGCAAATTGCTTATCAGATAACTTGATTTCTAGTGTCCCTGAGATGGAGCAGGATTAA 2670 0.4449 MENSRRPFDRSREPGPKKARLIEELDRAPNSGARQFPQLQVISGVATLPSARFRTNERDLESNDFGRRGGAGGGGYQPQPLPFQELVTQYKAALAELTFNSKPIITNLTIIAGENQAAEKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHQSMRHLFGTWKGVFPPQTLQIIEKELGFTSAVNGSSASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRNDRARRDAFNDSVPEKSTGASYGSNEFGSNISRNLGLGISRPGGRVTESGHDKGWYNKSGVVAGTMPGQRNGLSLKYSFLNTEAPKSMILDTHHQPAQKITSTQSSVISNSWKNSEEEEYTWDEMNSGLTGHGTSIVSSLSKDAWTADDDNLEVEDRNQVRNPFVEQHSIDELDRKAGQLSRFVSTPSSTSASTARMGNRPFLSNASIGLPGVAGPFHSLGDENPSGQSPLRRRSPSPPGPFSSMTFQARHQQQFGTSHNEVTIKTEKPPVSKVSLARETKSSTSTGNLPTRLGVRPSRTGGPSPATLISSVSTIALPSSLGPSSDNSPALSKIPQRKVGQPPRLSTLPPASSNVSSASAQTSDANNTLNPIANLLSSLVAKGLISAEKESTTKVPSELLTRLEEESDSITTGNSLPVASASGSAAVPVPSIKDDVDDTARTPISLSESTSPGVVNLIGFEFKLDVLREFHSSVISGLFDDLPHHCSICGFRLRFQKQLNRHLEWHATRDREDNGLTKASRWYLKSSDWIFGKAECVSENEADSVDTYGNEADRSQEDATVVAADENQCLCVLCGELFEDFYCEESGGWMFKGAVYFANSDSNSEMGFGDTSTGRGPIIHANCLSDNLISSVPEMEQD* 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2294 889 ProSitePatterns Zinc finger C2H2 type domain signature. 737 757 IPR013087 -
Pvu7g2294 889 MobiDBLite consensus disorder prediction 217 233 - -
Pvu7g2294 889 Gene3D - 82 207 IPR008942 -
Pvu7g2294 889 MobiDBLite consensus disorder prediction 657 672 - -
Pvu7g2294 889 CDD CID_Pcf11 87 199 - -
Pvu7g2294 889 MobiDBLite consensus disorder prediction 570 585 - -
Pvu7g2294 889 MobiDBLite consensus disorder prediction 570 617 - -
Pvu7g2294 889 ProSiteProfiles CID domain profile. 82 210 IPR006569 -
Pvu7g2294 889 MobiDBLite consensus disorder prediction 527 544 - -
Pvu7g2294 889 MobiDBLite consensus disorder prediction 655 685 - -
Pvu7g2294 889 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 491 885 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pvu7g2294 889 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 417 490 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pvu7g2294 889 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 252 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pvu7g2294 889 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 252 415 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pvu7g2294 889 Pfam CID domain 91 200 IPR006569 -
Pvu7g2294 889 SUPERFAMILY ENTH/VHS domain 85 204 IPR008942 -
Pvu7g2294 889 SMART 558neu5 85 207 IPR006569 -
Pvu7g2294 889 MobiDBLite consensus disorder prediction 465 558 - -
Pvu7g2294 889 MobiDBLite consensus disorder prediction 56 78 - -
Pvu7g2294 889 MobiDBLite consensus disorder prediction 489 516 - -
Pvu7g2294 889 MobiDBLite consensus disorder prediction 217 278 - -
Pvu7g2294 889 MobiDBLite consensus disorder prediction 246 263 - -
Pvu7g2294 889 MobiDBLite consensus disorder prediction 597 617 - -
Pvu7g2294 889 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 252 - -
Pvu7g2294 889 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 252 415 - -
Pvu7g2294 889 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 491 885 - -
Pvu7g2294 889 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 417 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2294 Pvu-Chr7 46274488 46282303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2294 73 874 C2H2 Transcription Factor Family AT4G04885 28.821 2.10e-82 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g2294 CID 7.1e-14 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2294 K14400 - gmx:100807857 1335.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2294 7 46274488 46282303 Pvu7g2294 7 46274488 46282303 ECH
Pvu1g1933 1 45192295 45198674 Pvu7g2294 7 46274488 46282303 PCT