Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2288 ATGGCTTCACTCAATTGCCATCAACTTTCACTCGCAACACACACCTTCACACACCACATAGACAATACCACCACTACCACCGCCATGTATTCTAATAATGCAACCGGCAGCAGCAGAGCCTCTTCCGGAACCGGCCGCTACCGCGGTGTCCGCCGTAGGAGCAACGGGAAATGGGTGTCTGAGATTCGTGAGCCCAAAAAGCCTAACAGGATTTGGTTAGGCACATTCCCTACACCTGAAATGGCCGCAGTGGCTTATGACGTGGCAGCTTATGCTCTCAAGGGTAAGGACGCTGAGCTCAATTTCCCTGACTCCGCTTCTTCCCTTCCTGTCCCCGCTTCACTCTCGGCGCGTGACATTCAGATGGCGGCAGCCGCTGCGGCGGGGGCTGCTGGAGCTGCGAAGGATGCTATGCAGACGCCAACAGGGAATTATAACTCTTCAGGGTTACAAGAGAACCAAGCAGGGATGAGTAACCAGTTCGTGGACGAGGATTTGATCTTTGACATGCCGAATGTTCTTGTCAATATGGCTCAAGGAATGCTGCTTAGTCCTCCTCCTTTTGACATTGGTTTGGAACCCAATAGCCCAGAAAACATCGAACATGAAACAAGCCTGTGGAATTTCCCTTAA 633 0.5182 MASLNCHQLSLATHTFTHHIDNTTTTTAMYSNNATGSSRASSGTGRYRGVRRRSNGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAAYALKGKDAELNFPDSASSLPVPASLSARDIQMAAAAAAGAAGAAKDAMQTPTGNYNSSGLQENQAGMSNQFVDEDLIFDMPNVLVNMAQGMLLSPPPFDIGLEPNSPENIEHETSLWNFP* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2288 210 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677
Pvu7g2288 210 MobiDBLite consensus disorder prediction 29 52 - -
Pvu7g2288 210 Gene3D AP2/ERF domain 45 104 IPR036955 GO:0003700|GO:0006355
Pvu7g2288 210 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Pvu7g2288 210 PRINTS Ethylene responsive element binding protein signature 85 105 IPR001471 GO:0003700|GO:0006355
Pvu7g2288 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 27 210 - -
Pvu7g2288 210 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Pvu7g2288 210 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
Pvu7g2288 210 CDD AP2 46 105 IPR001471 GO:0003700|GO:0006355
Pvu7g2288 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 210 - -
Pvu7g2288 210 MobiDBLite consensus disorder prediction 29 44 - -
Pvu7g2288 210 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2288 Pvu-Chr7 46221519 46222906 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2288 47 210 AP2-EREBP Transcription Factor Family AT2G36450 60.116 2.72e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu7g2288 AP2 1.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2288 - - pvu:PHAVU_007G222600g 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2288 7 46221519 46222906 Pvu7g2288 7 46221519 46222906 ECH
Pvu1g1937 1 45289609 45290175 Pvu7g2288 7 46221519 46222906 PCT