Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2287 ATGCAGAAACGAAAAGCTGGGAGGAAGAAGTTCCAAGAAACACGTCACCCCGTCTACAGAGGCGTAAGGCAGAGGAAGGGGAAGTGGGTGTGTGAGTTCCGACAACCTAATAAGAAGAACGCACGCCTGTGGCTTGGGACCTTCTCTCGCCCCGACATGGCTGCTGTTGCGTTTGACGTTGCCGCATTGGCTTTCAAGGGTGACAGGGCTTCCTTGAACTTCCCGGAAGCCATTTCCTTCTTGCCGCGTCTCAACTCAGGTACGTCCTCTGTGAGGACTATTCAGTTTGCCGCCACGCAGACCGCAGAGAAGCTTCTTTCTTGCACTGAGTTCCAAAAGCTGAGGGACGATGTTTCTTCTCGTGGAGGTTCTGGAAACTTCTTTTGGAATGAAGATTGTTTGAAGTTGGCATCGGATGAAAGTTCTAGAAGGTTCTTTTGGGATGAGGAGGAGGTGTTTAACATGCCGGAGTTGTTGAACAGCATGGCGGAAGCACTGATCATTGCACCTCCGGCTTTGCAGAAGGGATTCAATTGGGTTGATGGGGAAACCACAGTAGATTTGACTCTATGGTAA 576 0.5035 MQKRKAGRKKFQETRHPVYRGVRQRKGKWVCEFRQPNKKNARLWLGTFSRPDMAAVAFDVAALAFKGDRASLNFPEAISFLPRLNSGTSSVRTIQFAATQTAEKLLSCTEFQKLRDDVSSRGGSGNFFWNEDCLKLASDESSRRFFWDEEEVFNMPELLNSMAEALIIAPPALQKGFNWVDGETTVDLTLW* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2287 191 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Pvu7g2287 191 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Pvu7g2287 191 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Pvu7g2287 191 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Pvu7g2287 191 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 8 191 - -
Pvu7g2287 191 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Pvu7g2287 191 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Pvu7g2287 191 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Pvu7g2287 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 191 - -
Pvu7g2287 191 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2287 Pvu-Chr7 46214380 46215168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2287 3 191 AP2-EREBP Transcription Factor Family AT4G25490 44.211 2.93e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu7g2287 AP2 9.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2287 - - var:108324544 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2287 7 46214380 46215168 Pvu7g2287 7 46214380 46215168 ECH
Pvu7g2287 7 46214380 46215168 Pvu1g1937 1 45289609 45290175 PCT