Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2279 ATGGGGCATAGACATTTATATAGCTCATCTCCAATGTTTGAGGGTGAACCTGACCCGAACTGGAATCATATGCATACCGATCAACAATATGTGAACCTTGGTAGAAGTACCGCTTCAGACAATGGTTCTTTTATTTATCCTTTGGAAAATATGTCCATAGATAGCATCTCTTTTCCATCTCATTGGAACACTGCGCCAAGGTCAAATGGATATGCCTCCACAAGTCTCAACATTGAAGCACCCCCTCATCAAACAGATGTATCAGGCACTTCTCATGATCATTTTCTGCATTCATCAAGTGGCGGAATGTTTTATGCGGTGTCTGACAATTATGTACACCAGCCCTCTAGTTCCAATTATGACAGACAATCATTTCCTGTTGCTGATGGGGGTTTTATTGATCTCACAATGGGAAATGGGCGAGGGCCTCACAAGCGGAAGAGCCCTGGAGTTCCTTCAGTCTGTGAGAGAGGAAGTACAAGCAGATGTTTTAATGCTGCAAGTGCAAATGCAGCTGATCGTCCTACATCTTCAGAATTGCGGCCTGAAAAGCCCAATATGGATTCTCTATATATGCCTTGGGATCATGTGAATATGACACCCGATCATGTGAATATGACACCCTCATTTAGAGGTAGAGGCCTTTCAATACGAGGTGATAGTTCTTTAAGGAATGTGAGGAGTCGTTCTACACTTGATTTGGAATCCAACTTGGCTAGGACCCATTTATCGAATACTCATTCACACAACTCATTCTCTACTGGTCCCCAAATGGACCATTCTAGCATGGTAGATCTTTCAACTCAAACTTCTGGATCTTTGACAAGGGATTGGAGCCAAATGAGTGTATGTCCTGCTCATGGAAGGGTGCCATCATCAGATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTGTTGGAAGTGGTTCTAGTAATGCTCCTGTAGATATTGGAGGTTTTCATAATGAATTTGGAACTAGCAGAAATCCTACTGCTCCACAAAGTTTTCATAATAATAGTCAGGCTCAACCTGCAAGAGGAGTTCACAGTAACTACTCTCAAAGATCCACTCCAACTTTTAGGGGTTCTTCCAGCTTGCGCTTGGGTCGCATGACACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGACCACCATTGGCTGGCACAGCAATGATAGAAATGGAAGGTCAAGAATACATAGTGATAGATATCGAGCATTGGCTGATGAGGGTTTCATGATTGTTGATCGCACTTCACTGTATGGTAGGAATATGCTTGATCAGCATAGAGAGATGAGGATGGACATAGACAACATGAGTTATGAGGAACTACTTGCACTCGGAGAGAGAATAGGCCATGTGAGCACTGGATTGTCTGAGGATTTGATTTCCAAGTATTTGACAGAAACGATATACTGTTCATCCGAGCCAAGTCAAGAAGACGAAGCTTGTGCAATCTGCCTGGAAGAATACAAGAACGTGGATGATGTTGGAACGCTGAAAGCTTGTGGGCATGATTACCATGTGAGTTGCATTAAAAAGTGGTTATCTATGAAGAAAGTGTGTCCTATCTGCAAAGCTTCTGCTTTACCTGAGGAAACGAAGGATAAATAA 1647 0.4268 MGHRHLYSSSPMFEGEPDPNWNHMHTDQQYVNLGRSTASDNGSFIYPLENMSIDSISFPSHWNTAPRSNGYASTSLNIEAPPHQTDVSGTSHDHFLHSSSGGMFYAVSDNYVHQPSSSNYDRQSFPVADGGFIDLTMGNGRGPHKRKSPGVPSVCERGSTSRCFNAASANAADRPTSSELRPEKPNMDSLYMPWDHVNMTPDHVNMTPSFRGRGLSIRGDSSLRNVRSRSTLDLESNLARTHLSNTHSHNSFSTGPQMDHSSMVDLSTQTSGSLTRDWSQMSVCPAHGRVPSSDANAFNHEASHFLVGSGSSNAPVDIGGFHNEFGTSRNPTAPQSFHNNSQAQPARGVHSNYSQRSTPTFRGSSSLRLGRMTPSDDGLHMVAESYSSRHPRPLTTIGWHSNDRNGRSRIHSDRYRALADEGFMIVDRTSLYGRNMLDQHREMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSEPSQEDEACAICLEEYKNVDDVGTLKACGHDYHVSCIKKWLSMKKVCPICKASALPEETKDK* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2279 548 SUPERFAMILY RING/U-box 485 540 - -
Pvu7g2279 548 ProSiteProfiles Zinc finger RING-type profile. 495 537 IPR001841 -
Pvu7g2279 548 Pfam Ring finger domain 494 537 IPR001841 -
Pvu7g2279 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 541 IPR013083 -
Pvu7g2279 548 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 544 IPR045191 GO:0061630
Pvu7g2279 548 SMART ring_2 495 536 IPR001841 -
Pvu7g2279 548 MobiDBLite consensus disorder prediction 339 369 - -
Pvu7g2279 548 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 544 - -
Pvu7g2279 548 MobiDBLite consensus disorder prediction 245 264 - -
Pvu7g2279 548 CDD RING-H2_PA-TM-RING 495 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2279 Pvu-Chr7 46110997 46119518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2279 1 547 C3H Transcription Factor Family AT2G37150 40.459 5.81e-101 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2279 - - gmx:547939 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2279 7 46110997 46119518 Pvu7g2279 7 46110997 46119518 ECH
Pvu1g1824 1 43916297 43925159 Pvu7g2279 7 46110997 46119518 PCT