Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2276 ATGCAAATGATGCCCGGTGACCCCTTTTCCCTATCCACTTCCATCGGAGGCTTCACTCAAGAGCAAAATACAAACCCTAACCCTAAACCTAACCCCCCTCCCAAGAAGAAGAGAAACCTTCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTCTCGCCGAAGACCCTCATGGCCACGAACCGATTCATATGCGAGATATGCAATAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCACCGAAGGGGTCACAACCTTCCATGGAAGCTACGACAGAGGTCCAACAAAGAGGTAAGGAAGAAGGTTTATATCTGCCCCGAACAATCCTGCGTCCACCACGACCCTGCAAGAGCACTCGGCGACCTCACTGGCATCAAAAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGAAAAATGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCCCACGCCAAAACCTGTGGCACTAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCCAGGAAGGACAGCTTCATTACCCACAGAGCATTTTGCGATGCCTTGGCAGAAGAGAGTGCGAGACTCACCTCAGTTACGTCAACAAATCTAAATTTCAAGAGTGAAGAGGGTGGTAATGTGATGAACTCGCAGCCTGGTTTGGGAGGGCATGGACTAATTGCAGCACAAGGTCTTCAAAATGTTTCTGGCATTCCACAATTTGGTTCACATGGTTTTCGCTTGGATTTTAATGGAATGGAACAGCCAAGGCCTAGCTTGTCACTGTGGTTGAACCAGGGGAATCCCCAGATAAATAATAGTAATGTTAACAGCAACAATAATGGTCCCGATGTGGGGCCCAATTACATGTCGTCATGCTCTTCTTCAGGTTTGCCTGATATTGTGCAAATGGCTCAGGCTAATGCTTTGATGGGTTCTACATCGATGGTGTCTAATTTTGGAGTGCCTGCGGGTTCGAATTCCTCCAGTGCAAATCTTTCTCTGTCGTCACTTCCCACTGGTAAAAGAGGGGAAGCAGGAGGAACTGTAGTGGACTTGGCGTCTATTTATAACTCTGAGGGTCCAAACAAGAATTCAAAGCCTGCTTCACCTATGTCAGCCACTGCTCTTCTTCAGAAAGCAGCGCAGATGGGATCCACCAGAAGCACCAACCCTTCCATTTTCAGTGGTAGTTTTGGAGTGATGAACTCACCTTCCTCACAAACTACCAGTCTCAATAATAACAACAACGGGGGTGCAGCCATGATGCTGGGAAGTAATACCACTGCTGCAACTGATTTTACCTCATTGACGCATTCATCAAACAGTTTTGACCAACTCGTGATGCAAACCAATGCGCAGTTGCAAAGTGAACCTGTGAAGCTGAAGCTTCGTTCAAGCGCCGCGGAGCACAATTTGACAAGGGATTTTCTTGGAGTCAGCGGAGGAGGAGGAGGAGGTGGTGGTGGACCTCAGTTCCTACCCCAAGAACTTGCAAAGTTTGCTTCCTTAGGGTCGCCTATGGGGTTGAGCCATTTCACAAGTAACCAATGA 1560 0.4814 MQMMPGDPFSLSTSIGGFTQEQNTNPNPKPNPPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTSTNLNFKSEEGGNVMNSQPGLGGHGLIAAQGLQNVSGIPQFGSHGFRLDFNGMEQPRPSLSLWLNQGNPQINNSNVNSNNNGPDVGPNYMSSCSSSGLPDIVQMAQANALMGSTSMVSNFGVPAGSNSSSANLSLSSLPTGKRGEAGGTVVDLASIYNSEGPNKNSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMNSPSSQTTSLNNNNNGGAAMMLGSNTTAATDFTSLTHSSNSFDQLVMQTNAQLQSEPVKLKLRSSAAEHNLTRDFLGVSGGGGGGGGGPQFLPQELAKFASLGSPMGLSHFTSNQ* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2276 519 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 507 - -
Pvu7g2276 519 MobiDBLite consensus disorder prediction 1 25 - -
Pvu7g2276 519 Gene3D Classic Zinc Finger 119 197 - -
Pvu7g2276 519 PANTHER ZINC FINGER PROTEIN JACKDAW 7 507 IPR033243 GO:0003700
Pvu7g2276 519 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Pvu7g2276 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Pvu7g2276 519 SMART c2h2final6 64 86 IPR013087 -
Pvu7g2276 519 SMART c2h2final6 140 160 IPR013087 -
Pvu7g2276 519 SMART c2h2final6 105 135 IPR013087 -
Pvu7g2276 519 MobiDBLite consensus disorder prediction 1 48 - -
Pvu7g2276 519 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Pvu7g2276 519 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Pvu7g2276 519 Gene3D Classic Zinc Finger 42 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2276 Pvu-Chr7 46069938 46073937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2276 1 256 IDZ Gene Family AT5G03150 64.912 7.40e-123 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g2276 zf-C2H2_jaz 7.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2276 K25870 - gmx:100801182 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2276 7 46069938 46073937 Pvu7g2276 7 46069938 46073937 ECH
Pvu1g1826 1 43953139 43955620 Pvu7g2276 7 46069938 46073937 PCT