Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2275 ATGGCAACTGAAGCTGCAGACTCTTCCAACCACAACAATAACCAAGGCCATGGCACCACTGGAAATAGAGTTGATATCCCAATTCAAAAGGGTCCAGCATCATCTGAAATAATTGAGGAATTCCCAAGAGATCAACATGGGACAAGGCAAAACTTTATCGTGGATATACCTGCAATATCTCAGGAGGAACTGAAAGAAGATTATGTGAGGATAAACATGCCTCTAACTCCACCTCCAAGAAGAGTGGTTTTTTCCCCTTGTCCAAGTCCTGTTTACCCAAGAAGCAAAGAATCCCCAGGTCCCTCCTCATCAAAAAATAGATCAAATATTAAAACCTTTCTTCCCAAACTCAGTTTTAAATTTCGCAACACAAGTTTGGAGATTGAAAAGGCTGCTTTCCTAGCACTTGGAGGATCAGCAACAGTGGCCCCAAAAAAGCCTTTTCTTTCAAGGACATTATCTCTTGTCACACCCAGAGGGAATAAAACATCATCCTTACCTGTAACCCCGATTGCTCATTCAAATCCCGGGTCTGTACATGGCGGGAACATGGCTTATGCAGAAACAGTTGAGAATGAAATGAAATTACCAATTCATCGTTCCCGTTCAGTACCTATGCTTAACAAAGAAGGTAACTCACCAATGGTTAACAAAGAAGGTAACTCACCCGTACCTGGCATGTTTCGTATAGTTCTGACCACATTGCGATTGGATGATAAAATTGCCACAACACCTATGACATCTCCGATTCATGATACTGTTCAAAATGAGGATGGTGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAACTTGGAGAAGGTGCTGATACTTTTAAATTGGAGTGTAGCTGCAAAGGTGAGCTTTCATTGGCACACAAAGAATGTGCACTCAAATGGTTTACCATTAAAGGTAATAGAACATGTGAAGTGTGCAAACAAGAAGTTCAGAATCTACCCGTCACTCTTTTACGAGTTCAAAACGGTCAGGCCCATAACATACTGGGGGCAGAGGCTTCTCATTACAGGGTTTGGCAGGATGCTCCCGTTCTTGTTGTTATCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTGTCTAATATGGGATCCGGTTCTATTGCCATGTCTCTCCCATTTTCTTGTATATTGGGTCTTCTTGCAAGCATGACAGCTACAACAATGGTGAGGAGAAATCATGTTTGGGTTTATGCAACTGTTCAATTTTGTCTGGTGGTTCTTGCTGGGCATCTTTTCTTTTCATTGGTTCATATGCAAGCTGTTCTTGCTATCCTACTAGCTACACTAACTGGGTTTGGAGTTGTAATGTGTGGAACTTCTGTTCTAATGGAGATTTTAAAGTGGAGGAGGAGATCCCTTGCTCAATCAGATCAACAGCAAGTTTCCCAAGAGACAGTGCCACCGGATCAATCATCTAGAGTTGCTCATCAAACTCAAATTGGTTCTGAACAATCTGAAAGCAATTTGGGAGAGTCTCCTGAACAGAGTTGA 1533 0.4175 MATEAADSSNHNNNQGHGTTGNRVDIPIQKGPASSEIIEEFPRDQHGTRQNFIVDIPAISQEELKEDYVRINMPLTPPPRRVVFSPCPSPVYPRSKESPGPSSSKNRSNIKTFLPKLSFKFRNTSLEIEKAAFLALGGSATVAPKKPFLSRTLSLVTPRGNKTSSLPVTPIAHSNPGSVHGGNMAYAETVENEMKLPIHRSRSVPMLNKEGNSPMVNKEGNSPVPGMFRIVLTTLRLDDKIATTPMTSPIHDTVQNEDGGEDIPEEEAVCRICMVELGEGADTFKLECSCKGELSLAHKECALKWFTIKGNRTCEVCKQEVQNLPVTLLRVQNGQAHNILGAEASHYRVWQDAPVLVVINMLAYFCFLEQLLVSNMGSGSIAMSLPFSCILGLLASMTATTMVRRNHVWVYATVQFCLVVLAGHLFFSLVHMQAVLAILLATLTGFGVVMCGTSVLMEILKWRRRSLAQSDQQQVSQETVPPDQSSRVAHQTQIGSEQSESNLGESPEQS* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2275 510 CDD RING_CH-C4HC3_MARCH 270 318 - -
Pvu7g2275 510 PANTHER OS02G0165000 PROTEIN 2 505 - -
Pvu7g2275 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 325 IPR013083 -
Pvu7g2275 510 SMART ringv_2 269 318 IPR011016 GO:0008270
Pvu7g2275 510 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 2 505 - -
Pvu7g2275 510 MobiDBLite consensus disorder prediction 82 109 - -
Pvu7g2275 510 ProSiteProfiles Zinc finger RING-CH-type profile. 262 324 IPR011016 GO:0008270
Pvu7g2275 510 Pfam RING-variant domain 270 317 IPR011016 GO:0008270
Pvu7g2275 510 MobiDBLite consensus disorder prediction 1 22 - -
Pvu7g2275 510 MobiDBLite consensus disorder prediction 1 34 - -
Pvu7g2275 510 SUPERFAMILY RING/U-box 266 321 - -
Pvu7g2275 510 MobiDBLite consensus disorder prediction 470 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2275 Pvu-Chr7 46057427 46063317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2275 264 324 C3H Transcription Factor Family AT2G37950 43.548 6.17e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2275 - - pvu:PHAVU_007G221300g 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2275 7 46057427 46063317 Pvu7g2275 7 46057427 46063317 ECH