Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2271 ATGGGCAACATAGGAAGCAGCGGCTCCAACAGCCGTCGGAGACACGGCGGCAGCGGCAGCGGGAGGCGGATTCACCCGCCGCCTCCTCCTCATCCGCCGGTGATGCCTCTGCCGGAAGTCACGGCGAACCGGTTCGTGTACCCTCCTGCCGCCACGCCGTATCACAACTACCCTGGATACTACCCGCCGCCGACTACCATGCCGGCGCCTTTGCCGGCTCCTTACGACCACCACCACCGTCCGTCGGTGGACCCGATGTGGGGGAGGTGCCCGGCGGCTCCGGCAGCGCCGGCGCCGTATGTGGAGCACCAAAAGGCCGTTACTATAAAAAACGATGTCAACATCAAGAAGGAGACGCTAAGGATTGAGCCTGATGAAGAGAATCCTGGCCGTTTCCTCGTGACGTTTACGTTTGATGCCACCGTTTCTGGGAGCATCACAATACTTTTCTTTGCAAAAGAAGGCGAAGGTTGCATCCTAATCCCAATGAAGGAAGACGTTTTTCCATCCCTGACTGTAAATTTCCAGCAAGGTCTTGGGCAGAAGTTTAAACAGCCACCTGGAACTGGTATTGATTTTTCAATATTTGAGGAGTCCGAGTTATTGAATGTGGGGGACAATGATGTCTATCCCGTTGCAATTAAAGCAGATGCATCCTCTGTCAACCCTGATGAATCAAAATCAAATGAAACTCCATCATCTGGTAACACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAGTTTCAGGTGAAGGTTGTTAAGCAGATCTTATGGGTAAATGAAGTGAGGTATGAACTGCAGGAAATATATGGTATTGGAAATTCAGTGGAGAGTGACTTGGATGGGAATGACCCAGGAAAAGAGTGTGTTATATGTTTGTCAGAGCCTCGTGACACAACTGTCCTTCCATGTCGCCACATGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAAACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTGGGGCCTGAACCTGAGGAATGA 1053 0.5062 MGNIGSSGSNSRRRHGGSGSGRRIHPPPPPHPPVMPLPEVTANRFVYPPAATPYHNYPGYYPPPTTMPAPLPAPYDHHHRPSVDPMWGRCPAAPAAPAPYVEHQKAVTIKNDVNIKKETLRIEPDEENPGRFLVTFTFDATVSGSITILFFAKEGEGCILIPMKEDVFPSLTVNFQQGLGQKFKQPPGTGIDFSIFEESELLNVGDNDVYPVAIKADASSVNPDESKSNETPSSGNTNSQITQAVFEKEKGEFQVKVVKQILWVNEVRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPEE* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2271 350 ProSiteProfiles Zinc finger RING-type profile. 294 333 IPR001841 -
Pvu7g2271 350 SMART ring_2 294 332 IPR001841 -
Pvu7g2271 350 MobiDBLite consensus disorder prediction 23 37 - -
Pvu7g2271 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 350 - -
Pvu7g2271 350 MobiDBLite consensus disorder prediction 1 15 - -
Pvu7g2271 350 Pfam Zinc finger, C3HC4 type (RING finger) 292 338 - -
Pvu7g2271 350 MobiDBLite consensus disorder prediction 1 37 - -
Pvu7g2271 350 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 293 333 IPR045195 -
Pvu7g2271 350 SUPERFAMILY RING/U-box 293 339 - -
Pvu7g2271 350 PANTHER MAHOGUNIN 1 350 IPR045194 GO:0061630
Pvu7g2271 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 343 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2271 Pvu-Chr7 46029894 46034485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2271 95 313 C3H Transcription Factor Family AT3G09770 65.179 1.01e-100 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2271 - - gmx:100789032 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2271 7 46029894 46034485 Pvu7g2271 7 46029894 46034485 ECH
Pvu1g1831 1 44022555 44027489 Pvu7g2271 7 46029894 46034485 PCT