Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2265 ATGAATTGTAGCTGCGTACTACCGCTGCTACCAGCCACCAAAACAGACATCACAAACCTTCGTCCGCAAAACCCTAATCAACACCACTCCAGTCAAGAAACCAGCGGTCCAATGCCACCGAAGTTTGATCCCTCGCAGGTGGTGGACGTGTTCGTTCGCGTCACCGGGGGTGAGGTGGGCGCGGCGAGTTCTCTCGCGCCAAAGATCGGTCCGTTGGGTCTTTCTCCGAAGAAGATCGGTGAAGACATCGCCAAGGAGACTGCAAAGGACTGGAAGGGCCTCCGCGTGACGGTGAAGCTCACCGTTCAGAACCGCCAGGCGAAGGTGACGGTGGTGCCCTCCGCCGCCGCGCTTGTCATCAAAGCACTCAAAGAGCCCGAGAGAGACAGGAAAAAGACGAAGAACATAAAGCACAACGGAAACATCGCCCTGGACGACGTGATTGAGATAGCGAGGGTGATGAGGCCGCGCTCCATGGCGAAGGATCTCAGCGGAAGCATCAAAGAGATCCTCGGGACTTGTGTGTCTGTTGGGTGCACCGTCGATGGGAAAGACCCCAAGGATCTGCAACAGGAGATTTCCGATGGTGACGTTGAGGTTCCTCTTGAATGA 612 0.5605 MNCSCVLPLLPATKTDITNLRPQNPNQHHSSQETSGPMPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNIALDDVIEIARVMRPRSMAKDLSGSIKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEVPLE* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2265 203 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 35 124 IPR036796 -
Pvu7g2265 203 MobiDBLite consensus disorder prediction 16 44 - -
Pvu7g2265 203 CDD Ribosomal_L11 50 181 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pvu7g2265 203 Pfam Ribosomal protein L11, N-terminal domain 52 106 IPR020784 -
Pvu7g2265 203 Pfam Ribosomal protein L11, RNA binding domain 112 181 IPR020783 GO:0003735|GO:0005840|GO:0006412
Pvu7g2265 203 PANTHER 60S RIBOSOMAL PROTEIN L12 38 203 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pvu7g2265 203 Gene3D - 33 118 IPR036796 -
Pvu7g2265 203 Gene3D - 119 201 IPR036769 -
Pvu7g2265 203 MobiDBLite consensus disorder prediction 184 203 - -
Pvu7g2265 203 PANTHER 60S RIBOSOMAL PROTEIN L12-3-LIKE 38 203 - -
Pvu7g2265 203 MobiDBLite consensus disorder prediction 16 39 - -
Pvu7g2265 203 SUPERFAMILY Ribosomal protein L11, C-terminal domain 113 186 IPR036769 -
Pvu7g2265 203 Hamap 50S ribosomal protein L11 [rplK]. 46 183 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pvu7g2265 203 SMART rl11c 50 182 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pvu7g2265 203 ProSitePatterns Ribosomal protein L11 signature. 168 183 IPR020785 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2265 Pvu-Chr7 45969103 45970655 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2265 38 201 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 88.415 6.34e-107 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2265 K02870 - gmx:100527860 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2265 7 45969103 45970655 Pvu7g2265 7 45969103 45970655 ECH
Pvu7g2265 7 45969103 45970655 Pvu11g0817 11 7366535 7367431 ECH