Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2230 ATGGCAAAAGCAAATGGCAAGAACAAATCCACCGATGCGCTCCACCCTCCCTACTTCCAGATGATCGCCGACGCAATAACGTCGTTGAAGGAACGCACGGGTTCGAGTCAACCCGCGATAGCCAAGTTCGTCGAGGACAAGCACAGCAAAGTTCTTCCTCCCAACTTCCGGAAACTTCTCTCCGTTCAGTTGAAAAGTTTGGTCAAATCGGAGAAGCTCTACAAGGTCAAGAACTCCTACAAGCTTTCTTCTACGCAAACCAAGAACCCCAAAACCGCTCCGAAAGAGAAGGAGGTGACGGAGAAGACGAAGAAGCTGAGTCAGGTGAAGACGCCCGAAGCTCTGAAGAAGAAAGCCCCCAGCAAGAAGAAATATGTGGAGGCGGTGGCAGCCTCTGGAGGAGGGAAACTGAAGCAAGCCCCCAACATGAAGAAATATGTGGAGGCGGTGGCAGCCTCCGGAGGAGGGAAAGTGAAGCGTTTGAGTCAGGTGAAGACCCCCGAGGCCATGAAGAAGAAGCCCAATTTATCACCTGCCAAACGCAAGATCACTCCTAAACCTTCCAAGGACAAGAAGAAAGCTAGGAAATGA 591 0.5127 MAKANGKNKSTDALHPPYFQMIADAITSLKERTGSSQPAIAKFVEDKHSKVLPPNFRKLLSVQLKSLVKSEKLYKVKNSYKLSSTQTKNPKTAPKEKEVTEKTKKLSQVKTPEALKKKAPSKKKYVEAVAASGGGKLKQAPNMKKYVEAVAASGGGKVKRLSQVKTPEAMKKKPNLSPAKRKITPKPSKDKKKARK* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2230 196 SMART h15plus2 12 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu7g2230 196 MobiDBLite consensus disorder prediction 151 196 - -
Pvu7g2230 196 SUPERFAMILY "Winged helix" DNA-binding domain 13 96 IPR036390 -
Pvu7g2230 196 PRINTS Histone H5 signature 1 22 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pvu7g2230 196 PRINTS Histone H5 signature 28 45 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pvu7g2230 196 PRINTS Histone H5 signature 110 124 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pvu7g2230 196 PRINTS Histone H5 signature 164 183 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pvu7g2230 196 Pfam linker histone H1 and H5 family 15 82 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu7g2230 196 PANTHER HISTONE H1 5 192 - -
Pvu7g2230 196 MobiDBLite consensus disorder prediction 91 124 - -
Pvu7g2230 196 CDD H15 15 95 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu7g2230 196 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 14 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu7g2230 196 Gene3D - 9 107 IPR036388 -
Pvu7g2230 196 MobiDBLite consensus disorder prediction 81 124 - -
Pvu7g2230 196 PANTHER HISTONE H1 5 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2230 Pvu-Chr7 45544159 45545214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2230 16 142 Single Myb Histone (SMH) Gene Family AT1G72740 30.769 1.22e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2230 K11275 - gmx:100306187 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2230 7 45544159 45545214 Pvu7g2230 7 45544159 45545214 ECH