Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2214 ATGATGGAAACCAGTTACGCATCGCGAGTGTTTCGCGGTGTTCGGTTCGTTCTCCGTGGCTTCAATCCCGCCGCCGAAAGCCAGATCCGGCTTAAGCTTGAGGATGGCGGTGGAATTGACGCCGAGCAGTACGGTGGGAGTTGCACGCATGTCATTGTCGATAAGATTGCTTATGACGATCCTCTGTGTGTTACTGTTAGAAATGATCGGAAGACGCTCGTCACTGCACTGTGGGTTGATCACAGTGCTGATATTGGAATGCCCGTTGATGCTTCTTCGGTTATGTATAGACCTCCTAAAGACTTAGATGGAATACCAGGTGCAAAAGGTTTGATAATGTGCTTGACTGGTTATCTGCGCCAGGATCGGGATGACATTATGACAATGGTTGGCCTGATGGGTGCACATTTTTCCAAACCATTGGTGGCGAACAAGGTTACTCATCTCATATGCTATAAATTTGAAGGAGAGAAGTATGTGCTTGCAAAGAGATTGGGCACAATAAAGCTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAGGAATGGGTGCTTCTTCCTGAAGACAAATATAACAAGAGTGGTTTTGAACTAGAGACGATGGAGGAAGAGGCTAAGGATTCTGAAGAAGAGGGTGAAGATTCTAAGCTGGGAAAATCAGGGGGGAGAAATATAAAACAAAGCCCCGTTAATTCGAAATTTGACCAAGCTGCAACTCATGGATTGTTGAAATCAGTAATAGAGGCATCGAACAACTTACCAGATTCTACTGGTCCACGGGTTTTGCCAAATGTAAAAAATGGTGAAGACTCTTTAACCATTCCAGGAAAGAAGAGAAAATCTGATCGAGACTTTAGCTTTCAGAATGTTGATGATTCAAAGATAAGCTATCAGACTCCTGATATTTCTAGATTACCTGACAAATATAGAAAGACGACTGAGTCTAAGAATGCTGATTTTCCAAAGGCACTTGGGTGCCAGGGCCCTGGAAATATGGCAAATACAAAATCATCTGGTCAGCAGTCCGGTCTGCATGATAACACTATGGAGTCTGAGAAGTTGATAAGTAACTTGACATCAACTTCTGCAAGTGCAGCTGGAGTTGCACATTCAAATGAAAAGCTTAGAACTACTAGTTATTCTAAGAAGAACCAAAGGGATTTTTCTGTCCCAAGGATCTTAGATGGAAGCTCAGGCAGAGAAGGAAACAAATGTGAAAACAGTAAGGTTCACGAGGCAATTGAGTTTATCAAATCTACCAGTGTTGAAATTTCTGGGAGAGAAAATGATTTTACTAAAGAGGAGGAACCAATTAGTTTATTGCCTCAAAAGAGGATAAATGAAACTTCTTTTACGAAATTAAAATCAAGAAAGGTGTCTTCTGATGCAAAAATCTCCATCCAATCAGCAAATGGTAAATCTCAAGGATTAAAAGGGACATCTCTGGTTGATGAGCCACCCAAAGCTGATGACTATTGTTCTAAAGGCAAAGATGGTATGAATAACTCAAACACTTGCTTAGTTTCAAAACCTGCTGGTTCTAACTACAACTCACTAGCATTTGATGAGCGTTTCTCAAGAAATGCAAGCCCAGAATCTGCTCAGTGTGATAGTGTCTATCAGAATAGTCCACAAACAGCTGTTCATAGCTTAAGTGAGTCTAAAACTAATGGCAAGCCTGGAGTCACAAGTTCTGCAATGCGTCAAGTTGGTGGTAATGAAGCAGGGCAACATTTCAGTAAAAGTATTGATTGTTCATCAATGGGAAATAAAAACTCAAATAATGTGAAATCCGCTGGTTGTACTAACTTGGATTTAAGCAATGAAGAATGTAATAAACAGGTTAGAAAATCACCCAGAAAGAAGTCAGTTGCCAAGAGAATTTCGGGTTCTAAACCTATAGTAGGTGCCACTGCTAGACATAAAAGATCACTTTCCCTGAATAAAACTATCCTGCAAAGTGAAGGTGTAACTTTATCCAGCGGAAGCAAAGAGATATGTGATGCGAAGATGCATAAGGGATGTCCCCAAAGCAGGGATATTAACAATACGATGGAGCAAGAAGCAGTTAGTAAAAATACAGACTATGCTTCTGACAGAGCTGAGTTCTTGACGGATGAAACCGAGGCTCCAGATGATAAATGTGAATTTGAATTTGGAATGGCCCTAAATGAAGAATTGGTTCATCCTTCGGAAAAGCCAAATAGAGCTACAGAAGAGAAGTCAGAAGCAATTTGCCCTGCAACAAAATGTGAAGAGGCAAAGAAAGGCACAAATAAAACAGAAATTCAGAAAACGTCTTCATTGGTAGTAAAGAATCAAGCAAAAAAACGTGCTGCTGGCAAAGCGAATGCCACAGTTAGTAAATACGCAGACGATGCTGGTGGCAGAACTGAAGCTTTGGATGATGAAACCGAAGCTCCAGATGACAAACTTGAAAATGAGTTAGGAATGGCACCTGAAGTAGAATTGGTTCATCCTTCGGAAAAGCCAAATAGAGCTACAGAAGAGAAGTCAGAAGCAATTTGCCCTGCAACAAAATGTGAAGAGGCAAAGAAAGGCACAAATAAAACAGAAATTCAGAAAACGTCTTCATTGGTAGTAAAGAATCAAGCAAAAAAACGTGCTGCTGGCAAAGCCAATGCCACAGTTAGTAAATACGCAGACGATGCTGGTGGCAGAACTGAAGCTTTGGATGATGAAACCGAAGCTCCAGATGACAAACTTGAAAATGAGTTAGGAATGGCACCTGAAGTAGAATTGGTTCATCCTTCAGAAAAACCAGATACATCAACAGAAGAGAAGCCAGAAGCAATTTGCCCCGTGCCAAAATGTGAAGAGGTAATGCCTCCTAAAAGAGTCACAAATAAAACTGAAAAACAGAAATCTTCACTGGTAGTAAAGCACCAAGCAAGGAAACGTCCTGTTGGTAAAGCCAAGGCCACAGTTTCCAAGGATTTATCGAAATCAAAAGTTGCAGTATCTAGGGAGAAGGTTCCTAATGAAACGGGGCATGAGGCAGAGATAGAAACCACAGAAGAAATGCCCTTTCCTGCTGATAGACGTGACAACTCAGCCCTAGCAAGAAATAAGTCAGAGAATTTAGCTGAAGAAGAGAAGGAGAATAGACCAATTGATGGAGTGCAGAATCCTGTAAAGGGCAGAAGCGATGACAATCCAAATTATAAATCTAATGTAAGGCCAAGAAAGATGAAGTCTACTAAAGTGGGGCTCAATCCATCTATTTCAGAATCTAACACGAGAGTTAAAACTGAAGCGGCATGTTTTATATTAAGCGGGCACCGCCTACAGAGAAAAGATTTTCAGCAAGTAATCAAGCGCTTAAAAGGAAGGGTTTGCCGGGATTCTCACCAGTGGTCATATCAGGCAACACACTTCATAGCTCCAGACCCCATACGCAGAACTGAGAAATTTTTTGCTGCGACTGCATCAGGAAGGTGGATTCTGAAAACTGATTACTTAAGTGCCAGTAGCCAGGAAGGAAAATTCTTGGCGGAGGAGCCTTATGAGTGGCACAAAAGTGGTCTCAGTGAGGATGGCGCAATCAATATGGAGGCTCCAAGAAAGTGGAGGCTAGTTAAAGAAAAAACAGGTCATGGCGCCTTCTATGGAATGCGTATTGTTGTATACGGCGATTGCATTGCTCCGCCTTTGGATACTCTGAAACGTGTCATCAAAGCTGGCGATGGAACAATCTTAGCTACTTGTCCTCCTTATACACGCTTCCTTGGTACCGAAATCGACTATGCTGTAGTTAGCCCTGGCATGCCACGTGTTGATATGTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCGGACTATTTGGTTGAGTATGTTTGCAAGCCCGGGTTCTCCCTGGAGAAGCATGTATTATATGGCACTCATGCTTGGGCAGAGAGAGCGTTTGATAGACATAACAGCAGGGCAGAAGAGATTGTTGCTCCTGAGGATTCCACTGATGATGATGATGATGATGTAACTTGCCAAGTGTGTGGATCCCGCGACAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGTGGTTCTGTTGGGTGTGGAGAGGGTACTCACATCGATTGCTGCGATCCTCCCCTAACAGATGTACCTGAGTACGATTGGTTTTGTTCAAAATGCAGTACCACCCCAAACTCCTCAAACAATCCCACTAAAAGGAAAAAGAGTGTTTTATCATAA 4227 0.4206 MMETSYASRVFRGVRFVLRGFNPAAESQIRLKLEDGGGIDAEQYGGSCTHVIVDKIAYDDPLCVTVRNDRKTLVTALWVDHSADIGMPVDASSVMYRPPKDLDGIPGAKGLIMCLTGYLRQDRDDIMTMVGLMGAHFSKPLVANKVTHLICYKFEGEKYVLAKRLGTIKLVNHRWLEDCLKEWVLLPEDKYNKSGFELETMEEEAKDSEEEGEDSKLGKSGGRNIKQSPVNSKFDQAATHGLLKSVIEASNNLPDSTGPRVLPNVKNGEDSLTIPGKKRKSDRDFSFQNVDDSKISYQTPDISRLPDKYRKTTESKNADFPKALGCQGPGNMANTKSSGQQSGLHDNTMESEKLISNLTSTSASAAGVAHSNEKLRTTSYSKKNQRDFSVPRILDGSSGREGNKCENSKVHEAIEFIKSTSVEISGRENDFTKEEEPISLLPQKRINETSFTKLKSRKVSSDAKISIQSANGKSQGLKGTSLVDEPPKADDYCSKGKDGMNNSNTCLVSKPAGSNYNSLAFDERFSRNASPESAQCDSVYQNSPQTAVHSLSESKTNGKPGVTSSAMRQVGGNEAGQHFSKSIDCSSMGNKNSNNVKSAGCTNLDLSNEECNKQVRKSPRKKSVAKRISGSKPIVGATARHKRSLSLNKTILQSEGVTLSSGSKEICDAKMHKGCPQSRDINNTMEQEAVSKNTDYASDRAEFLTDETEAPDDKCEFEFGMALNEELVHPSEKPNRATEEKSEAICPATKCEEAKKGTNKTEIQKTSSLVVKNQAKKRAAGKANATVSKYADDAGGRTEALDDETEAPDDKLENELGMAPEVELVHPSEKPNRATEEKSEAICPATKCEEAKKGTNKTEIQKTSSLVVKNQAKKRAAGKANATVSKYADDAGGRTEALDDETEAPDDKLENELGMAPEVELVHPSEKPDTSTEEKPEAICPVPKCEEVMPPKRVTNKTEKQKSSLVVKHQARKRPVGKAKATVSKDLSKSKVAVSREKVPNETGHEAEIETTEEMPFPADRRDNSALARNKSENLAEEEKENRPIDGVQNPVKGRSDDNPNYKSNVRPRKMKSTKVGLNPSISESNTRVKTEAACFILSGHRLQRKDFQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAATASGRWILKTDYLSASSQEGKFLAEEPYEWHKSGLSEDGAINMEAPRKWRLVKEKTGHGAFYGMRIVVYGDCIAPPLDTLKRVIKAGDGTILATCPPYTRFLGTEIDYAVVSPGMPRVDMWVQEFLKHEIPCVVADYLVEYVCKPGFSLEKHVLYGTHAWAERAFDRHNSRAEEIVAPEDSTDDDDDDVTCQVCGSRDRGDVMLICGDESGSVGCGEGTHIDCCDPPLTDVPEYDWFCSKCSTTPNSSNNPTKRKKSVLS* 1409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2214 1408 Gene3D BRCT domain 1205 1306 IPR036420 -
Pvu7g2214 1408 MobiDBLite consensus disorder prediction 363 405 - -
Pvu7g2214 1408 Coils Coil 191 211 - -
Pvu7g2214 1408 Pfam twin BRCT domain 111 175 IPR001357 -
Pvu7g2214 1408 MobiDBLite consensus disorder prediction 272 289 - -
Pvu7g2214 1408 Pfam BRCA1 C Terminus (BRCT) domain 1099 1163 IPR001357 -
Pvu7g2214 1408 MobiDBLite consensus disorder prediction 312 346 - -
Pvu7g2214 1408 CDD BRCT_TopBP1_rpt7 1095 1168 - -
Pvu7g2214 1408 MobiDBLite consensus disorder prediction 532 568 - -
Pvu7g2214 1408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1323 1407 IPR013083 -
Pvu7g2214 1408 ProSiteProfiles Zinc finger PHD-type profile. 1336 1392 IPR019787 -
Pvu7g2214 1408 SUPERFAMILY BRCT domain 1096 1181 IPR036420 -
Pvu7g2214 1408 MobiDBLite consensus disorder prediction 990 1046 - -
Pvu7g2214 1408 Gene3D BRCT domain 100 221 IPR036420 -
Pvu7g2214 1408 MobiDBLite consensus disorder prediction 199 231 - -
Pvu7g2214 1408 Gene3D BRCT domain 1 95 IPR036420 -
Pvu7g2214 1408 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 801 IPR044254 -
Pvu7g2214 1408 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 833 1389 IPR044254 -
Pvu7g2214 1408 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Pvu7g2214 1408 Pfam PHD-finger 1339 1390 IPR019787 -
Pvu7g2214 1408 MobiDBLite consensus disorder prediction 950 966 - -
Pvu7g2214 1408 MobiDBLite consensus disorder prediction 330 346 - -
Pvu7g2214 1408 MobiDBLite consensus disorder prediction 781 840 - -
Pvu7g2214 1408 Gene3D BRCT domain 1088 1204 IPR036420 -
Pvu7g2214 1408 ProSiteProfiles BRCT domain profile. 1096 1178 IPR001357 -
Pvu7g2214 1408 SUPERFAMILY BRCT domain 8 93 IPR036420 -
Pvu7g2214 1408 SUPERFAMILY BRCT domain 105 192 IPR036420 -
Pvu7g2214 1408 MobiDBLite consensus disorder prediction 826 840 - -
Pvu7g2214 1408 SMART BRCT_7 1206 1293 IPR001357 -
Pvu7g2214 1408 SMART BRCT_7 8 86 IPR001357 -
Pvu7g2214 1408 SMART BRCT_7 1087 1168 IPR001357 -
Pvu7g2214 1408 SMART BRCT_7 99 183 IPR001357 -
Pvu7g2214 1408 MobiDBLite consensus disorder prediction 250 292 - -
Pvu7g2214 1408 SUPERFAMILY FYVE/PHD zinc finger 1328 1393 IPR011011 -
Pvu7g2214 1408 SMART PHD_3 1338 1390 IPR001965 -
Pvu7g2214 1408 MobiDBLite consensus disorder prediction 872 1082 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2214 Pvu-Chr7 45435461 45442861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2214 129 217 Core DNA Replication Machinery Family AT4G02110 71.910 6.53e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu7g2214 BRCT 5.2e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2214 K10728 - gmx:100799144 1245.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2214 7 45435461 45442861 Pvu7g2214 7 45435461 45442861 ECH