Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2208 ATGGAGCTCTCTGTGATTGCAAGAAACATGGAAGAAGTTGTCTTGTTGGTTGATGATTTGAAATTGCTTTCTGGTATTTCTCGCTGTAGAATATGTCATGAAGAGGAATTTGAGAGCACCAAAACCTTGGAAGCTCCTTGTGCTTGTTCGGGGACAGTTAAGTTTGCTCATAGAGACTGCATTCAGACGTGGTGCAATGAGAAAGGAAACACAACTTGTGAAATATGTCTCCAGCAATACGAACCTGGATATACAGCAGTGCAGAAGAAATCGCAAATAGCTGATGCAGCAATGACCATTAGGGATAGCCTGCAAATATCAATGACTGAACGAGAACCGTTAAACACAAGCATAATTGAGGGAAACAATTACTCTGAATGCACATATGCTGCAGATAGAAGCGCAGCTTGTTGTCGATCCCTGGCTTTAGCTTTTACTCTGATCTTGCTTGTAAGACATCTTTTTGCACTTCTTAGCGATGGAATGGAAGATTATCCTTTTACAATTCTTACGGTCTTTTTACTGAGGGCCAGTGGAATTATTATACCCATGTACATAATTATTAAGACGATCGGAGCCATACATAATAATATCAAGCGTTACCATCATCAGGATTCTGATGATGACTCATCGATATCAGATGGAGAGGATGAAGAAAATGGGACACCAGATGATGATGCAATTTCAAGACATTCACAATCATAA 705 0.3986 MELSVIARNMEEVVLLVDDLKLLSGISRCRICHEEEFESTKTLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTAVQKKSQIADAAMTIRDSLQISMTEREPLNTSIIEGNNYSECTYAADRSAACCRSLALAFTLILLVRHLFALLSDGMEDYPFTILTVFLLRASGIIIPMYIIIKTIGAIHNNIKRYHHQDSDDDSSISDGEDEENGTPDDDAISRHSQS* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2208 234 SUPERFAMILY RING/U-box 28 81 - -
Pvu7g2208 234 ProSiteProfiles Zinc finger RING-CH-type profile. 21 83 IPR011016 GO:0008270
Pvu7g2208 234 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 6 228 IPR033275 -
Pvu7g2208 234 SMART ringv_2 28 77 IPR011016 GO:0008270
Pvu7g2208 234 Pfam RING-variant domain 29 76 IPR011016 GO:0008270
Pvu7g2208 234 MobiDBLite consensus disorder prediction 204 234 - -
Pvu7g2208 234 Pfam Protein of unknown function (DUF3675) 82 191 IPR022143 -
Pvu7g2208 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 87 IPR013083 -
Pvu7g2208 234 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 6 228 - -
Pvu7g2208 234 CDD RING_CH-C4HC3_MARCH 29 76 - -
Pvu7g2208 234 ProSiteProfiles Zinc finger RING-type profile. 29 76 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2208 Pvu-Chr7 45372627 45375135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2208 29 76 C3H Transcription Factor Family AT2G37950 44.898 3.59e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2208 - - gmx:100776501 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2208 7 45372627 45375135 Pvu7g2208 7 45372627 45375135 ECH
Pvu1g2198 1 47586725 47588920 Pvu7g2208 7 45372627 45375135 PCT