Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2179 ATGGAGACTATGAGTGTTCGGGTGATGAGAAGCTTATCAGATACTGAATTATCTGCTAAATATGGAAGTGAAGAAGAGATAGTAATTAAGAAAGGAACATGGACCGAGGAAGAAGATTCTCTTCTGATCAACTACGTCAACCTCCTCGGCGAAGGCCACTGGAACTCCCTCGCTATCTCTGCAGGCCTAAAGCGAACGGGCAAAAGCTGCAGACTAAGATGGTTGAACTACTTGCGTCCAAATGTTCGACGTGGGAACATCACCCTTCAAGAACAGCTCTTGATTCTCGAACTCCATTCCCGCTGGGGCAACCGGTGGGCTAAAATAGCAGAACAATTGCCTGGTAGAACAGATAATGAAATAAAGAACTATTGGAGGACGAGAGTGGTGAAGCAAGCCAAGCAACTCAAATGTGATGTAAACAGCAAACAGTTTAGGGATGCTGTGCGTTTTGTTTGGATGCCTCGCCTTATGGAGCGGATTCAGGCTTCTTCTGGGAATGCCTCTTCTTCCTATGGACATGACCAAACCACATTGTGCAACACTCAAACCCACGGTGAATCTAGTGGGGCCAATCCCATGATGTTTTGTGACAGCTCAATGATTTCCTCGTACGCTTCAGGAGTTGATGTTCAGCCTCCTTCTCTCTCTGATGCAAGTACAACTTCATCTTGCAATTTAATGGGAGATGGTAGCTGCTCATCGGACAGTGCTCAAAAGGGGTGGCAGCAGTGGGACTACTCTGATCTCCAAGCATTTGAACAGAACCATGGTTTTGGTGATGCAGACTTGTGGACCGATGAAAACATGTGGTTTTTGCAGCAGCATCTTGCTGATGATTTTTGA 846 0.461 METMSVRVMRSLSDTELSAKYGSEEEIVIKKGTWTEEEDSLLINYVNLLGEGHWNSLAISAGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILELHSRWGNRWAKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDAVRFVWMPRLMERIQASSGNASSSYGHDQTTLCNTQTHGESSGANPMMFCDSSMISSYASGVDVQPPSLSDASTTSSCNLMGDGSCSSDSAQKGWQQWDYSDLQAFEQNHGFGDADLWTDENMWFLQQHLADDF* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2179 281 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Pvu7g2179 281 Gene3D - 28 84 - -
Pvu7g2179 281 Gene3D - 88 129 - -
Pvu7g2179 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 82 IPR017930 -
Pvu7g2179 281 SUPERFAMILY Homeodomain-like 30 125 IPR009057 -
Pvu7g2179 281 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Pvu7g2179 281 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 17 275 - -
Pvu7g2179 281 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 275 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pvu7g2179 281 Pfam Myb-like DNA-binding domain 84 127 IPR001005 -
Pvu7g2179 281 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
Pvu7g2179 281 CDD SANT 33 78 IPR001005 -
Pvu7g2179 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 133 IPR017930 -
Pvu7g2179 281 SMART sant 30 80 IPR001005 -
Pvu7g2179 281 SMART sant 83 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2179 Pvu-Chr7 45070914 45072115 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2179 24 280 MYB Transcription Factor Family AT2G47190 48.302 3.53e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu7g2179 Myb_DNA-binding 7.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2179 K09422 - gmx:100777932 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2225 1 47821425 47822714 Pvu7g2179 7 45070914 45072115 PCT