Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2178 ATGGATGCTAACTGTGGGTCCCTAGTAGAGACACAAGCCAAGATGCAACATAGTGAAAACGAGATGTTAGGCCTCAGAAAAGGTCCATGGACGGTTGACGAGGACACCATTCTGGTCAATTACATCGCCACCCATGGTGAAGGTCACTGGAATTCCCTCGCACCATCTGCAGGTTTGAGGAGGAGTGGGAAGAGTTGCAGATTAAGGTGGCTAAACTACTTGCGCCCCGATGTGCGGCGTGGAAACATCACACTCCAAGAACAAATACTAATTCTCGACCTTCACTCTCGGTGGGGCAACAGGTGGTCGAAGATTGCTCAGCACCTGCCAGGAAGAACGGACAATGAAATAAAGAACTATTGGAGGACGAGAGTGATAAAACAGGCGAAGCAACTAAGGTGCGATGTAAACAGCAAACAGTTCAGAGACACGTTGCGTTATGTGTGGATGCCGCGCTTACTGGAGCGGGTTCAGCCCACATCGCAAATTCTCCACCCTCAGATGGACCCGGGCCCAAGTGAAATTCCGGGCTTTCTTCAACAAACCGGGTTTCACGGTTTAGATTCGGTGACGGAGTGGGATAAAGGGAACCACCCCACCGGTTCTTACTCGGACTCATCGTCCGTGGAGCTCCAAGTTTACTCCAATTCAGACCATAGCGATTCTTCGGGTTCGGGTTCGGGTTTCGATATGTGGGGAAGTTTGAACATGCAGATGTTGGAAGAAGGAAGCGTGGGGGTGAATCGTTGGAAAGTTTGTGGAATGATCTCGAATTAA 777 0.5006 MDANCGSLVETQAKMQHSENEMLGLRKGPWTVDEDTILVNYIATHGEGHWNSLAPSAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLRCDVNSKQFRDTLRYVWMPRLLERVQPTSQILHPQMDPGPSEIPGFLQQTGFHGLDSVTEWDKGNHPTGSYSDSSSVELQVYSNSDHSDSSGSGSGFDMWGSLNMQMLEEGSVGVNRWKVCGMISN* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2178 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Pvu7g2178 258 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Pvu7g2178 258 SMART sant 26 76 IPR001005 -
Pvu7g2178 258 SMART sant 79 127 IPR001005 -
Pvu7g2178 258 MobiDBLite consensus disorder prediction 195 209 - -
Pvu7g2178 258 MobiDBLite consensus disorder prediction 189 209 - -
Pvu7g2178 258 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Pvu7g2178 258 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 13 169 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pvu7g2178 258 CDD SANT 84 123 IPR001005 -
Pvu7g2178 258 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 13 169 - -
Pvu7g2178 258 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Pvu7g2178 258 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Pvu7g2178 258 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Pvu7g2178 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Pvu7g2178 258 Gene3D - 84 125 - -
Pvu7g2178 258 CDD SANT 29 74 IPR001005 -
Pvu7g2178 258 Gene3D - 27 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2178 Pvu-Chr7 45045204 45046968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2178 3 163 MYB Transcription Factor Family AT1G48000 66.667 3.86e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu7g2178 Myb_DNA-binding 1.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2178 K09422 - gmx:778065 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2226 1 47850920 47852335 Pvu7g2178 7 45045204 45046968 PCT