Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2163 ATGGAAAAGAAAACGACAATGGTCTCTGCTATTTCTCTGATTCTCGTAGTTGGCGTTGCCCTAGGTGTTGTCGCTTATGTCTCCACCGGCAATGACGACCCCGGCACCGCAACCGACGACGGTGGTAAGGTCACCACCCACACGAAAGCTGTGCAAGCCGTGTGCCAAAACAGCGACGACAAGAAGTTCTGCTCCGACACTTTCACCTCCGTCAACTCCTCAGACCCAACGGCATACGTCAAAACCGTCGTGAGAAACACAATGGACGGCGTCATCAAAGCCTTCAACCTAAGCGACACTCTCACCATCCAAAATAGCAAGAGCAACTCTACCGTCAAGATGGCCCTTGAAGATTGCAAGGACCTGTTGGAGTTCGCCATCGACGAATTAGAAGCGTCCGAGATTCTTGTAAAAGAGAACAACATTAACAACATCAACGACCGCGTCTCCGAACTCAAAAACTGGATTGGCGCCGTCGTCGCGTACCAGCAGTCGTGCCTCGACGGCTTCGACTCCGACAAGGAGAAGGACATGCAATCCAAGTTGCAAACCCAAGGTTTGGACGACGTTGGGAAGTTAACGGCGTTAGCGCTTGACGTTGTGTCCAGCTTCGCGGAAATACTCTCCGACTTCAATTTGGATCTCACTACCAAGACTTCGTCTCGTCGTCTTCTCGATTTGGAACAAGATGGATATCCATCGTGGTTATCAATGCCGGATCGGAAGCTCTTGGCGGATGCAGGTAAAGGAGGTTCAGTTACACCTAATGTGATTGTTGCCAAGGATGGTAGTGGCGATTATAAGACCGTTTTGGATGCTATTAACTCCTATCCCAAGAATCAACAAGGAAGATACATTATCTACGTCAAGGCCGGTACCTATGATGAGTACATCACCGTTGACAAAAAAAAGCCTAATCTTCTAATCTACGGCGATGGCCCCACAAAGACAATCATCACCGGCAATAAAAACGTCGTCGATGGTTTTAGGACGATGAGATCCGCTACCTTCGCGACGGTTGGAGATGATTTCATTGCAAAGTCTATGGCATTTGAGAACACTGCCGGCGCGGTGAAACACCAAGCAGTGGCGCTGCGCGTGCAAGGTGATCGGTCGGTCTTCTACGACTGCGCCATGCACGGTTATCAAGACACACTGTACACCCACGCACATCGTCAGTTCTACCGCAACTGCGAAATCTCCGGCACGGTGGATTTCATTTTCGGCTACGGCACCACCCTGATCCAGAACTCGAAGATTATTGTGCGGAAGCCCGACGCGAATCAGCAGAACATTATCGTGGCGGACGGCACGGACCAAAAGAACATGCCAACAGGAGCGGTGCTGCAGAACTGCGAGATCGTTGCGGCGCCGGAGCTGGAGCCGCAAAAGAAGACGTTTAAATCGTACTTGGCGAGGCCGTGGAAAGCATATTCGAGGGCCATCTTCCTAGAAAACACGATCAGCGATGTGATTCAGCCAGATGGGTATCTTCCGTGGAATGGGAACATGTTCCTGGACACGTGTTACTTTGCTGAGTATCAGAACACTGGCGCGGGTGCCGATGTGAAAGCTAGGGTCAAGTGGGGTCGTGGGGTCCTTAGCAAGGCTGACGCTAGCAAATTCACTGCTGATACGTGGCTCCAAGCAAACACGTGGCTCCCTGCCACTGGCGTCCCTTTCGATCTTGGCCTCTCCAAAGCTTGA 1707 0.5138 MEKKTTMVSAISLILVVGVALGVVAYVSTGNDDPGTATDDGGKVTTHTKAVQAVCQNSDDKKFCSDTFTSVNSSDPTAYVKTVVRNTMDGVIKAFNLSDTLTIQNSKSNSTVKMALEDCKDLLEFAIDELEASEILVKENNINNINDRVSELKNWIGAVVAYQQSCLDGFDSDKEKDMQSKLQTQGLDDVGKLTALALDVVSSFAEILSDFNLDLTTKTSSRRLLDLEQDGYPSWLSMPDRKLLADAGKGGSVTPNVIVAKDGSGDYKTVLDAINSYPKNQQGRYIIYVKAGTYDEYITVDKKKPNLLIYGDGPTKTIITGNKNVVDGFRTMRSATFATVGDDFIAKSMAFENTAGAVKHQAVALRVQGDRSVFYDCAMHGYQDTLYTHAHRQFYRNCEISGTVDFIFGYGTTLIQNSKIIVRKPDANQQNIIVADGTDQKNMPTGAVLQNCEIVAAPELEPQKKTFKSYLARPWKAYSRAIFLENTISDVIQPDGYLPWNGNMFLDTCYFAEYQNTGAGADVKARVKWGRGVLSKADASKFTADTWLQANTWLPATGVPFDLGLSKA* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2163 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 202 IPR035513 -
Pvu7g2163 568 Pfam Pectinesterase 256 550 IPR000070 GO:0030599|GO:0042545
Pvu7g2163 568 PANTHER PECTINESTERASE 3 566 - -
Pvu7g2163 568 SUPERFAMILY Pectin lyase-like 254 564 IPR011050 -
Pvu7g2163 568 Gene3D - 250 565 IPR012334 -
Pvu7g2163 568 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Pvu7g2163 568 TIGRFAM PME_inhib: pectinesterase inhibitor domain 44 182 IPR006501 GO:0004857
Pvu7g2163 568 PANTHER PECTINESTERASE 3 566 - -
Pvu7g2163 568 SMART PMEI_2 46 200 IPR006501 GO:0004857
Pvu7g2163 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 45 204 IPR035513 -
Pvu7g2163 568 Pfam Plant invertase/pectin methylesterase inhibitor 50 199 IPR006501 GO:0004857
Pvu7g2163 568 CDD PMEI-like_3 53 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2163 Pvu-Chr7 44885309 44887479 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2163 2 565 Carbohydrate Esterase AT3G05610 40.246 2.03e-146 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2163 K01051 - gmx:100820142 933.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2249 1 48037819 48039537 Pvu7g2163 7 44885309 44887479 PCT
Pvu7g2163 7 44885309 44887479 Pvu1g2248 1 48031828 48033546 PCT