Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2147 ATGGGCAAAGCCTCTAGTTCTTCCTCCTCTTCAATCACCAGCTGCAGGAACAACCCTTCCAATTCAACTGCATCCTCTCTCACACACCAACATAGTCAAGACCTTCGCACAGATCTTAGGCTTGGACTCAGCATTTCCGCCACTCAACATGTTGGCTCTTCCAGTTCAGGGGGGCCCTGGCAACCGATGCTGCCACATCTAAGTAGTTTTTCACAAGCTACTGAAGTGAATGATTGCAGCGATCATACCAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCAATTGGTAGAAAACTCAATTTGTTAGCTCATGATGGCTATCACGAGTTAGTAAAGACCCTCGAACAAATGTTTGACACTACCATTCTGTGGGGGACTGAGATGGATGGAGTGCAACAAGAGAGATGCCATGTTCTAACTTATGAAGATGGAGAAGGAGATTTGATTATGGTTGGAGACGTTCCTTGGGAGATGTTCCTTTCAGCTGTAAAAAGGTTGAAGATCACAAGGGTTGAGACATATGGGTGA 531 0.4557 MGKASSSSSSSITSCRNNPSNSTASSLTHQHSQDLRTDLRLGLSISATQHVGSSSSGGPWQPMLPHLSSFSQATEVNDCSDHTSFFVKVYMEGIPIGRKLNLLAHDGYHELVKTLEQMFDTTILWGTEMDGVQQERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVETYG* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2147 176 Gene3D - 78 175 - -
Pvu7g2147 176 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Pvu7g2147 176 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 176 IPR003311 GO:0005634|GO:0006355
Pvu7g2147 176 SUPERFAMILY CAD & PB1 domains 80 170 - -
Pvu7g2147 176 MobiDBLite consensus disorder prediction 1 31 - -
Pvu7g2147 176 Pfam AUX/IAA family 75 171 IPR033389 -
Pvu7g2147 176 PANTHER AUXIN-INDUCED PROTEIN 2 176 - -
Pvu7g2147 176 ProSiteProfiles PB1 domain profile. 84 174 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2147 Pvu-Chr7 44756498 44758043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2147 88 169 B3 DNA Binding Superfamily AT4G23980 38.554 1.78e-13 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pvu7g2147 AUX_IAA 9.2e-29 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2147 7 44756498 44758043 Pvu7g2147 7 44756498 44758043 ECH
Pvu1g2262 1 48126300 48127367 Pvu7g2147 7 44756498 44758043 PCT